Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05986 ATGGAAGGAACCTCTACACCAGCAATTCGACGTGATCCTTACGAAGTTTTGTCTGTTTCAAAGGAATCAACCGACCAGGAAATTAAAACCGCTTATAGAAAGCTTGCTCTCAAGTATCACCCTGACAAAAATGCCAGCAATCCTGAAGCTTCGGAACTATTCAAAGAGGTTGCATATTCTTATAGTATCTTATCTGACCCAGAGAAGAGAAGGCAGTATGATAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATAGATTTATCTAATCTTGGGACTGTGAACACGATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAAGCTTTGAATGGCACAGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCAGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTTGAACAAGATGCAAATGCTGGCTATGGTTTGGCTTTGCAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCAGAATTAAAGCCTGGCACACATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAGTCACATGAAGATACCACCCAAAAACTTCAGGACATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAATCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGAAAGATATACAAAAGAAAAACAGTCGGTAGACGAGCTTCTGAAACAAAGGGACGGTATCCACTCTACCTTTACCATTGTTAAGCCATCCAATATTAGTGCAAGTGGTAGTAATTTAAGCAATGGAAGTTCGAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATGGAAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTTAATCTTAAGGGTTCGGGCTCGGGTTCTGCTGATAAGAAGTTTATTTAA 1242 0.4058 MEGTSTPAIRRDPYEVLSVSKESTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANAGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTERYTKEKQSVDELLKQRDGIHSTFTIVKPSNISASGSNLSNGSSSKISGEDSKGESPGEDGGSDGKDKSGKKKWFNLNLKGSGSGSADKKFI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05986 413 Gene3D DnaJ domain 3 94 IPR036869 -
Trre1g05986 413 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 8 403 - -
Trre1g05986 413 MobiDBLite consensus disorder prediction 373 395 - -
Trre1g05986 413 MobiDBLite consensus disorder prediction 356 372 - -
Trre1g05986 413 SMART dnaj_3 11 69 IPR001623 -
Trre1g05986 413 Pfam DnaJ domain 12 74 IPR001623 -
Trre1g05986 413 CDD DnaJ 12 66 IPR001623 -
Trre1g05986 413 FunFam Chaperone protein dnaJ 16 1 94 - -
Trre1g05986 413 SUPERFAMILY Chaperone J-domain 11 82 IPR036869 -
Trre1g05986 413 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Trre1g05986 413 Coils Coil 282 337 - -
Trre1g05986 413 PRINTS DnaJ domain signature 32 47 IPR001623 -
Trre1g05986 413 PRINTS DnaJ domain signature 14 32 IPR001623 -
Trre1g05986 413 PRINTS DnaJ domain signature 49 69 IPR001623 -
Trre1g05986 413 PRINTS DnaJ domain signature 69 88 IPR001623 -
Trre1g05986 413 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Trre1g05986 413 MobiDBLite consensus disorder prediction 356 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05986 Trre-Chr1 64138081 64142293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05986 3 84 C2H2 Transcription Factor Family AT1G74250 43.678 6.31e-14 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05986 1 64138081 64142293 Trre1g05986 1 64138081 64142293 ECH