Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05969 ATGGCCTCCGGTGAAGGGAGGCGGCGTCATCACGATCTTGTGCCACTTGCTGCATTGCTTAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGAATTGGTCAAGCTGCTCAGTCTAAGAAAGGGGAGGATTATTTTCTAGTTAAGACTGATTGTCAGCGCGTACCGGGGAACTCTTCAACGGCCTTTTCTGTATTTGCGATCTTTGATGGACACAACGGAAATGCTGCTGCCGTTTTTACTAAGGAAAATTTGTTAAATCATGTTCTGTGTGCCCTTCCTCGAGGGCTTGGGCGAGATGAGTGGTTGCAAGCTTTACCTAGGGCACTGGTTGCTGGATTTGTTAAGACTGATAAAGAATTTCAGAGCAGAGGAGAAACTTCTGGGACCACAGCCACGTTTGTGATAGTTGATCGGTGGACTGTGACAGTTGCATCTGTTGGAGATTCTCGTTGTATACTGGATACACAGGGTGGCGCTGTTACCACCTTAACAGTTGATCACAGACTAGAAGAGAATATTGAAGAGAGGGAACGTGTTACTGCAAGTGGAGGTGAGGTTGGGCGGCTTAGCATTGTCGGTGGTGCTGAGATTGGCCCTCTTCGATGCTGGCCAGGAGGTCTATGCCTTTCAAGGTCGATAGGAGACATGGATGTTGGGGAGTTTATTGTTCCAATACCATATGTCAAGCAAGTGAAGCTATCAAAAGCCGGTGGGAGGCTTATAATTGCTTCTGATGGCATATGGGATGCTGTATCATCAGAAATGGCTGCAAAATCATGCCGTGGTTTGCCAGCCGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACTAGAGGGTTAAAGGATGACACGACATGCATAGTAGTTGACATAATCCCACCTGATAACGAATTACCACCAACACCTCCCCCGAAAAAGCGGAATAAGCTGAGAGATCTTTTCTTGTTCAGGAAGAGGTCCCGTGATACTGCTGGCAAGCTGTCAAAGAAGCTTTCAGCTATAAATATAGTTGAAGAACTGTTTGAAGAAGGATCAGCCATGCTTGCTGAAAGATTAGGAAATGATGAGAACTCAGGACAATCAACATCTGGCCTTTTTGTCTGTGCTGTATGCCAAGTTGATCTTGCTCCAAGCGAGGGCATATCTGTCCATGCAGGTTCAATTTTCTCTACAAGCTCGAAGCCGTGGCAAGGTCCTTTTCTATGTTGTGATTGTCGCAATAAGAAGGATGCAATGGAAGGAAAACGTCCAAGTGGAGTTAAAGTGTCATAA 1290 0.4605 MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRIGQAAQSKKGEDYFLVKTDCQRVPGNSSTAFSVFAIFDGHNGNAAAVFTKENLLNHVLCALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTTLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDAVSSEMAAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPKKRNKLRDLFLFRKRSRDTAGKLSKKLSAINIVEELFEEGSAMLAERLGNDENSGQSTSGLFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCCDCRNKKDAMEGKRPSGVKVS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05969 429 Gene3D - 36 301 IPR036457 -
Trre1g05969 429 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
Trre1g05969 429 PANTHER PROTEIN PHOSPHATASE 38 296 IPR015655 GO:0004722|GO:0006470
Trre1g05969 429 FunFam probable protein phosphatase 2C 5 35 302 - -
Trre1g05969 429 Pfam Protein phosphatase 2C 61 269 IPR001932 -
Trre1g05969 429 CDD PP2Cc 43 297 IPR001932 -
Trre1g05969 429 SMART PP2C_4 25 295 IPR001932 -
Trre1g05969 429 SMART PP2C_SIG_2 51 297 IPR001932 -
Trre1g05969 429 SUPERFAMILY PP2C-like 41 297 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05969 Trre-Chr1 64065838 64068382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05969 1 428 PP2C-type Phosphatase Gene Family AT1G68410 79.587 0.0 698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05969 1 64065838 64068382 Trre1g05969 1 64065838 64068382 ECH