Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05947 ATGGACTCAAACACTTCTAGTTTTCTTTTGAACTCATCAACTTTTCACTCAGTTTTCTATCAGGATAAACAAGATGATGGCATAATTGATCTTGGTCTTAGTCTTGGAAGTGTTCAACATGATGCTTATCATTCTTCTGCCAATTTGTATGATGTTGACCTTATGGATTGGCCTAATATGAAGAATTCAAGCACAACACATTCAAGATCTGCACATGAAAACTTTGATGAAGAAATAGAGGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAAGTTAACATGGATGGGGTCTCTATTGGTAGGAAAATTTGTATTCTTGATCATGGAGGATATTCAAGTCTATCAATTCAATTAGAACACATGTTTGGTAGCCAATCAGTTTCTGGTATAAGATTATTTGAATCTGGATCAGAATATTCATTATTCTACAAGGACAGAGAAGATAATTGGAGGACTGTTGGTGATGTTCCATGGAAGGAATTTGTAGAATGTGTGAAAAGGCTAAGGATTGCACGAAAGAATGGTGGCTATGTTAACATTTCATCTTAA 552 0.3587 MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGSVQHDAYHSSANLYDVDLMDWPNMKNSSTTHSRSAHENFDEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHGGYSSLSIQLEHMFGSQSVSGIRLFESGSEYSLFYKDREDNWRTVGDVPWKEFVECVKRLRIARKNGGYVNISS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05947 183 Pfam AUX/IAA family 61 174 IPR033389 -
Trre1g05947 183 SUPERFAMILY CAD & PB1 domains 88 171 - -
Trre1g05947 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 52 174 IPR003311 GO:0005634|GO:0006355
Trre1g05947 183 ProSiteProfiles PB1 domain profile. 88 176 IPR000270 GO:0005515
Trre1g05947 183 Gene3D - 82 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05947 Trre-Chr1 63894582 63896216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05947 83 171 B3 DNA Binding Superfamily AT1G19220 37.079 4.58e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre1g05947 AUX_IAA 4.2e-24 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05947 1 63894582 63896216 Trre1g05947 1 63894582 63896216 ECH