Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05942 ATGGAGGCGCAACAACAACCTCCAACGCCGTCAACCGCACCACCGTTATCCTCCGTCGCACCTCCGCCACCACACCTCAACTATCCCGAGTCCGTCGATTCCTCCCCCCGCTCCCGCAACACCGACTCATGGGACGAACCTTTCCCTCCGGCGTCATCAAAACTCCGTCTGATGTGCAGTTATGGTGGCCACATCGTCCCTCGTCCACATGACAAATCCCTATGTTACGTCGGTGGTGACACACGAATCGTCGTCGTTGAACGCGCAACCTCACTCGCGGACCTATCCACGCGCCTCTCCAAAACCTTCCTCAACGGAAGATCTTTCACCCTCAAGTATCAACTCCCAAACGAAGACCTAGATTCGTTAATTTCAGTTACCACCGATGAAGACCTAGAAAATATGATCGATGAATACGATCGAACGAATTCGTCAAATTCGTCTCTCAAACCCTCGCGAATTCGTCTTTTTCTATTTCCAACTAAACCTGAATCTGCTCAGTCAATTCCTCCGCAAATTCTCGATACTTCTGCCAAATCCGATTATTGGTACCGTGATGCGTTAAACGGCGCCGGATTGCTTAACCGAGGGTTTTCAGATTCTGCTTCTGTTAACTGTCTTTTAGGTCTTGATGATGATGTTGCTGGGAATAATATTGAAACTGGTTCTAGAGAAGCTCCTGAAGGTGTTTCTCAACCTGGATCTTTTGGGAATTGTAAGAATTTGAAGCAAGATGTTCACTCTGTTCCTGATTCGCCTATGTTGGAGACTACATCGTCTTTTGGTTCAACTTCTTCGTCACCGTCGTTGGCTAATTTGCCTCCGATTAGGGTGCATGTGGAAGATGGTGGTTCTGGTGGTGTTAGGGTACAACAGCAGCAACAACCGCAACAACAACTACAACAGCAGCAGCAGCAGCAGCAGGATCAGAAGATTTTGGGAATTGAGGAACAGTTTGCTCAAATGGGAGTTGTTGTTGGTGGAATTGGACAGAAGCAACAGGATGAGGGATTTGCTGTGATGTCTTCGCCGCCTCATCCTCCGGTGCCGACTACACTTTCTGTGGCAGCAGTTGGTGTTCCGGTGGTTATTGGTGATTATCAGAACAGGGTGTTTTCTGACGACGAGAGATCGGATCATGGAGTGGCTGTAGGGTATAGAAAACCACCAACTCCTCAGCCACAGATTGTTCAAGTTCAACCTCAGGCACAATCTCAAGCACAATCTCAGGCACAATCCCAAGCACAAACGCAGACACAGTCACAACAACCTCCTCAATTTCAACAGAAGTCAAGTGGTGGCACTGATTTGCCTTCTCCTGATTCAGTTTCAAGTGATAATAGTCTTTCGAATGCAATATCGCGTCAAACACCTGTTATCTATCAAGAGCAAATTCAGATTCAACCTGGAACTACAAGAGTTCTAAGCAACCCTGTGGATCCAAAACTCAATTTGGCTGATTCACATGGTAGGATCCAGGTGCAGCAACATGTACAGGACCCTGGATATTTACTGCAACAGCAATTCGAACTCCAGCAGCAGCAGCAGCAGCAGCAACAACAGCCTCAACATCAGCCCCAACATCAGCAGCAACAACAACCTCAACATCAGCCCCAACATCAGCAGCAACAACAATTTCAACATCAGCAGCAGCAGCAGTTTATACACGGTGGACACTACATTCATCATAACCCTGCAATTCCTACATACTATCCTGTATATCCTTCACAGCAACAACCCCATCAGCAGGTTTACTATGTGCCTGCAAGACAGCCACAAGCTTACAATCTTCCAGTGCAGCAGGGTAATATAGGTGAATCTGCCGCAACAATCCCTTCTAGTAGACCCCAAAACCCTCCAAACCCTACTACATTGGTTCAACAAAATGCGGCTTACACCCCCGTCAGAAATGCCCCTCTACCCAAAACTGAAATGACGGCGGCTGCTTACAGAACTGCAACTGCAGGCAACCCTCAATTTGTGCAAGTTCCTACAGGTCAGCATCAGCAGCAATATGTTACTTACTCCCAGATCCACCACCCATCCCAATCCATGGCCCCTAATTCTGCTGCCCCTGCCAATTATGCTTATGAATATGCTGATGCTGCTCAAATATACTACTCACAGCCTATGGCGCCCACAATGCCGTCACAGTACCAGACCATGGCAGCTTCTAATATGATGCAGCCGGAAGTTTCTGCCCAGCATCCATCAGACGGCTTGAAGCAGCAGATAAGAACCTCACAGCCATTATAA 2256 0.4783 MEAQQQPPTPSTAPPLSSVAPPPPHLNYPESVDSSPRSRNTDSWDEPFPPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERATSLADLSTRLSKTFLNGRSFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTNSSNSSLKPSRIRLFLFPTKPESAQSIPPQILDTSAKSDYWYRDALNGAGLLNRGFSDSASVNCLLGLDDDVAGNNIETGSREAPEGVSQPGSFGNCKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGGSGGVRVQQQQQPQQQLQQQQQQQQDQKILGIEEQFAQMGVVVGGIGQKQQDEGFAVMSSPPHPPVPTTLSVAAVGVPVVIGDYQNRVFSDDERSDHGVAVGYRKPPTPQPQIVQVQPQAQSQAQSQAQSQAQTQTQSQQPPQFQQKSSGGTDLPSPDSVSSDNSLSNAISRQTPVIYQEQIQIQPGTTRVLSNPVDPKLNLADSHGRIQVQQHVQDPGYLLQQQFELQQQQQQQQQQPQHQPQHQQQQQPQHQPQHQQQQQFQHQQQQQFIHGGHYIHHNPAIPTYYPVYPSQQQPHQQVYYVPARQPQAYNLPVQQGNIGESAATIPSSRPQNPPNPTTLVQQNAAYTPVRNAPLPKTEMTAAAYRTATAGNPQFVQVPTGQHQQQYVTYSQIHHPSQSMAPNSAAPANYAYEYADAAQIYYSQPMAPTMPSQYQTMAASNMMQPEVSAQHPSDGLKQQIRTSQPL 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05942 751 MobiDBLite consensus disorder prediction 371 449 - -
Trre1g05942 751 ProSiteProfiles PB1 domain profile. 54 161 IPR000270 GO:0005515
Trre1g05942 751 MobiDBLite consensus disorder prediction 1 49 - -
Trre1g05942 751 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 74 161 - -
Trre1g05942 751 MobiDBLite consensus disorder prediction 397 449 - -
Trre1g05942 751 CDD PB1_UP2 58 159 - -
Trre1g05942 751 PANTHER OS05G0427100 PROTEIN-RELATED 28 547 - -
Trre1g05942 751 SUPERFAMILY CAD & PB1 domains 70 169 - -
Trre1g05942 751 Gene3D - 74 159 - -
Trre1g05942 751 MobiDBLite consensus disorder prediction 287 305 - -
Trre1g05942 751 Pfam PB1 domain 70 160 IPR000270 GO:0005515
Trre1g05942 751 MobiDBLite consensus disorder prediction 31 47 - -
Trre1g05942 751 MobiDBLite consensus disorder prediction 251 272 - -
Trre1g05942 751 MobiDBLite consensus disorder prediction 726 751 - -
Trre1g05942 751 SMART PB1_new 69 159 IPR000270 GO:0005515
Trre1g05942 751 MobiDBLite consensus disorder prediction 244 305 - -
Trre1g05942 751 MobiDBLite consensus disorder prediction 514 553 - -
Trre1g05942 751 MobiDBLite consensus disorder prediction 8 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05942 Trre-Chr1 63848862 63851338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05942 51 231 MAP Kinase Kinase Kinase AT1G79570 34.783 2.41e-25 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05942 1 63848862 63851338 Trre1g05942 1 63848862 63851338 ECH
Trre1g05942 1 63848862 63851338 Trre3g03818 3 49274753 49277314 ECH