Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05939 ATGCCAGAAATTCAGTTGGGTGTACACACTATCAGATCACATGGAGCTAGTGTTGCAAGGATACATATGCATGACTGGTTGATTCTTTTGCTTCTTGTGGTAATTGATGCTGTCTTGAATATAATAGAGCCATTTCACCGTTTTGTTGGAGAGGGGATGTTGACTGACCTTAGATACCCACTGAAGGATAACACGATTCCCTTTTGGGCAGTTCCGATAATAGCAATATTGCTGCCACTTGCCGTCTTTCTTGTTTACTATTTCATTCGAAAGGATGTTTATGACTTTCACCATGCCATATTAGGCCTTCTATTTTCCGTACTCATTACTGCGGTGATAACTGATGCTATTAAAGATGGTGTTGGACGGCCACGGCCGGATTTCTTCTGGCGCTGTTTCCCTAATGGAACAGGGGTCTTTGATAAAGTAACAAGTGATGTTCAGTGTACTGGAGATAAAAGTGTTATAAAGGAAGGGCACAAAAGTTTCCCGAGTGGGCATACATCTTGGTCCTTTGCTGGTCTTGTTTATCTCTCTTGGTATCTATCCGGAAAAGTTAGGATTTTTGATCGCAGGGGCCACGTTGCAAAGCTCTGTCTTGTTCTCTTACCCCTCCTCACGGCAGCTTTAATTGCTGTCTCCCGTGTTGATGATTATTGGCATCATTGGCAAGATGTGTTTGCTGGAGGTCTTATAGGGACGACAATTTCTTCCTTTTGTTACTTGCAATTCTTTCCACCTCCATATGACAGTGATGGTTGGGGACCTCATGCATATTTCCAGATGTTAGCTGAATCTCGTAATGGTGCTCAGCCGCCTGTTATCAATGACAGTCAACTTGCGCAATCCGCAGAGCTTCAGACTGTATCTTTGTATATCCCATCTCAACATGATGGAGAGGCACGGGGCAATAGCTGGGATTCAAGCCCCATGTTAGGAGGTGGGCTATCACAAAATGCAAGGATGCATTGA 972 0.4393 MPEIQLGVHTIRSHGASVARIHMHDWLILLLLVVIDAVLNIIEPFHRFVGEGMLTDLRYPLKDNTIPFWAVPIIAILLPLAVFLVYYFIRKDVYDFHHAILGLLFSVLITAVITDAIKDGVGRPRPDFFWRCFPNGTGVFDKVTSDVQCTGDKSVIKEGHKSFPSGHTSWSFAGLVYLSWYLSGKVRIFDRRGHVAKLCLVLLPLLTAALIAVSRVDDYWHHWQDVFAGGLIGTTISSFCYLQFFPPPYDSDGWGPHAYFQMLAESRNGAQPPVINDSQLAQSAELQTVSLYIPSQHDGEARGNSWDSSPMLGGGLSQNARMH 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05939 323 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 19 252 - -
Trre1g05939 323 SMART acid_phosph_2 98 241 IPR000326 -
Trre1g05939 323 MobiDBLite consensus disorder prediction 297 323 - -
Trre1g05939 323 CDD PAP2_containing_1_like 55 244 - -
Trre1g05939 323 FunFam Lipid phosphate phosphatase 2 20 252 - -
Trre1g05939 323 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 21 249 IPR036938 -
Trre1g05939 323 PANTHER LIPID PHOSPHATE PHOSPHATASE 12 285 IPR043216 GO:0006644
Trre1g05939 323 Pfam PAP2 superfamily 100 245 IPR000326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05939 Trre-Chr1 63810115 63813284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05939 1 289 Lipid Metabolism Gene Families AT1G15080 76.125 8.74e-162 451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05939 1 63810115 63813284 Trre1g05939 1 63810115 63813284 ECH