Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05937 ATGGCTGTTGATAGAGAATCTCTTACCAATGCTGATTCTGGCCAATCTCGTCTTCATGAGCTTGGTTACAAACAAGAACTCAAACGCGACCTTTCGGTACTTTCAAATTTTGCGTTTTCATTTTCAATTATATCAGTATTAACTGGAGTAACTACACTTTACAACACTGGTTTAAACTATGGAGGTCCTGTTTCACTTGTATATGGATGGCTTATAGCTTCTGTTTTTACCATGCTTGTTGCTTTATCTATGGCTGAAATTTGTTCTTCTTATCCAACTTCTGGTGGTCTTTATTATTGGAGTGCTAAACTTGCTGGTCCCAATTGGGCACCTTTTGCTTCCTGGATTACTGGCTGGTTCAATATTGTTGGTCAGTGGGCAGTGACAACAAGTGTAGATTTTTCACTTGCACAGCTCATTCAGGTTATCATTCTTCTTAGTACTGGTGGAAAAAACGGCGGTGGTTATGAAGGATCAAAATATGTAACTATTGCTTTCCATGCTGGAATTTTGGTTCTACATGGTATAATGAACAGCCTTCCAATCTCATGGTTATCATTCTTAGGACAGTTGGCTGCTTTCTGGAATGTTTTAGGTGTTTTTGTGCTTATGATTCTCATTCCATCTGTTGCACCGGAAAGAGCGAGTGCCAAGTTTGTTTTCACCAATTTTAATAGTGACAACGGGGAAGGAATTAATAGTAAGCCGTATATATTTCTCTTGGGACTTCTAATGAGTCAGTACACCCTAACAGGATATGATGCATCGGCTCATATGACAGAAGAAACCAAGGATGCTGATATTAATGGACCAAAAGGAATTATCAGTGCTGTTGGGATATCTGTTATTGCTGGATGGGGTTACATACTAGGAATTACCTTTGCCGTTACCGATATCCCTTACCTTTTGAATGAAAATAATGAAGCTGGCGGATACGCCATTGCAGAAGTATTTTATCTTGCATTTAAGAGAAGATATGGCCATGGAGTTGGTGGCATTATTTGCTTAGGAATTGTTGCTGTTGCTATATTTTTCTGCGGTATGAGTTCAGTCACAGCCAATTCAAGGATGGCTTATGCATTCTCAAGAGATGGGGCCATGCCATTGTCATCATTGTGGCATAAAGTTAACGGCCAGGAAGTCCCCATAAATGCCGTTTGGCTTTCCGTTATAATATCTTTTTGCATGGCACTAACGTCTCTTGGAAGCATAGTGGCATTTGAAGCCATGGTATCCATAGCAGTGATTGGTCTCTACATTGCTTATGCACTACCTATCTTCTTCAGAGTGACCTTGGCGCGAAAGCGTTTCGTGGCAGGGCCTTTCAACTTGGGCATTTACGGAGTCCTTGTTGGTTGGATTGCAGTTCTTTGGGTGGCAACAATCTCTATACTATTCTCATTGCCTGTTTCATACCCAATAACCATTGAGACATTAAACTACACTCCTGTGGCTGTTGGATGTTTGCTCATTATTGTACTTTTTTATTGGATATTCAGTGGTAGGCATTGGTTTAAAGGCCCTATAACCAATATAGAAAAGTGA 1545 0.4026 MAVDRESLTNADSGQSRLHELGYKQELKRDLSVLSNFAFSFSIISVLTGVTTLYNTGLNYGGPVSLVYGWLIASVFTMLVALSMAEICSSYPTSGGLYYWSAKLAGPNWAPFASWITGWFNIVGQWAVTTSVDFSLAQLIQVIILLSTGGKNGGGYEGSKYVTIAFHAGILVLHGIMNSLPISWLSFLGQLAAFWNVLGVFVLMILIPSVAPERASAKFVFTNFNSDNGEGINSKPYIFLLGLLMSQYTLTGYDASAHMTEETKDADINGPKGIISAVGISVIAGWGYILGITFAVTDIPYLLNENNEAGGYAIAEVFYLAFKRRYGHGVGGIICLGIVAVAIFFCGMSSVTANSRMAYAFSRDGAMPLSSLWHKVNGQEVPINAVWLSVIISFCMALTSLGSIVAFEAMVSIAVIGLYIAYALPIFFRVTLARKRFVAGPFNLGIYGVLVGWIAVLWVATISILFSLPVSYPITIETLNYTPVAVGCLLIIVLFYWIFSGRHWFKGPITNIEK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05937 514 PIRSF AA_transporter 13 508 - -
Trre1g05937 514 ProSitePatterns Amino acid permeases signature. 61 92 IPR004840 GO:0006865|GO:0016020|GO:0055085
Trre1g05937 514 FunFam Amino-acid permease BAT1 25 504 - -
Trre1g05937 514 PANTHER AMINO-ACID PERMEASE BAT1 8 513 - -
Trre1g05937 514 Gene3D Amino acid/polyamine transporter I 25 506 - -
Trre1g05937 514 Pfam Amino acid permease 31 488 IPR002293 GO:0016020|GO:0022857|GO:0055085
Trre1g05937 514 NCBIfam amino acid permease 18 508 IPR004756 GO:0006865|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05937 Trre-Chr1 63795607 63799070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05937 78 512 Organic Solute Cotransporters AT2G01170 78.391 0.0 664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05937 1 63795607 63799070 Trre1g05937 1 63795607 63799070 ECH