Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05932 ATGCATAACAACGACGTTTGTTCTCCGTTTGCTTCGTTGTACTCTGCTCTGACTAATGAAAATCTTCCATCACTCGCCGGAAACTGCAGCAACGGCGGCGGCGTTTCGCTGATACAAAAGCATCAGGATATGGTGAATCGTCACAGTATGTGTCTCAGTCGCCTCGTGGAGACTTCCAAAGAGGTTGAAGCTCTGCAGCAAGAGAACGGACAGCTCCGTGCGGTGAACAAGGAGTTGCAGAAGAATCTGAACCTTCTCGTTCAGGCTTCGCTGGAGAACCGATTTGGCGGTGGCGGATCCTCCGGCCAGACTCAATCGTCTCCGTTTGATCTGATGCACGGTTTCCATAACTTGAATCTTGGCGATGGAAAAGAAAACTGTGCTGATTGGAATAGCAATAACATCAATAATAATAACAAGGAGCTTCAGGAAGTTTCCGATGAGAGTCCAACGAGTGTGATAGACAATAACGGTGTTGAAACTGAGAGGTTTTCGCTGCCGAAGAGCATATCTGTGAGATCCAATGGCTACTTGAAGGTTGCTCAGCCTCCGGCCGTCGCAACTAACAATAATGCTGTTCGCACCAAGGGCGCTAACCGCTCCCGTGCCTCCTCCACTCAAGCTTCGGATACAGTTCAAAAGGTATTTGTACGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTGTGCAACAAATGGCAGGAAACTGGCGCTTGCCCTTATGGAGATCACTGCCAATTCGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTCGTGTGCCCGTATGGCCATAGATGCCATTTCCGTCATGCACTTACTGAACAAGAGAAAGCTCTATCACAACCTAAGCCCAGATCAATGAAGCTGGAAAGATAA 963 0.4984 MHNNDVCSPFASLYSALTNENLPSLAGNCSNGGGVSLIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFGGGGSSGQTQSSPFDLMHGFHNLNLGDGKENCADWNSNNINNNNKELQEVSDESPTSVIDNNGVETERFSLPKSISVRSNGYLKVAQPPAVATNNNAVRTKGANRSRASSTQASDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQPKPRSMKLER 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05932 320 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Trre1g05932 320 SMART c3hfinal6 236 263 IPR000571 GO:0046872
Trre1g05932 320 ProSiteProfiles Zinc finger C3H1-type profile. 236 264 IPR000571 GO:0046872
Trre1g05932 320 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Trre1g05932 320 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 262 IPR000571 GO:0046872
Trre1g05932 320 Coils Coil 55 82 - -
Trre1g05932 320 SUPERFAMILY CCCH zinc finger 270 304 IPR036855 GO:0046872
Trre1g05932 320 Gene3D - 231 269 - -
Trre1g05932 320 Gene3D - 270 306 - -
Trre1g05932 320 FunFam Zinc finger protein 36, C3H1 type-like 1 270 306 - -
Trre1g05932 320 SUPERFAMILY CCCH zinc finger 233 268 IPR036855 GO:0046872
Trre1g05932 320 FunFam zinc finger CCCH domain-containing protein 15-like 230 269 - -
Trre1g05932 320 PANTHER CCCH ZINC FINGER/TIS11-RELATED 41 310 IPR045877 GO:0003729
Trre1g05932 320 MobiDBLite consensus disorder prediction 188 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05932 Trre-Chr1 63751818 63754156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05932 37 315 C3H Transcription Factor Family AT1G68200 50.877 4.39e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre1g05932 zf-CCCH 4.5e-12 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05932 1 63751818 63754156 Trre1g05932 1 63751818 63754156 ECH