Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05855 ATGACACTCTCACGATCATTCAGAAGATTCCCAAATCTTGATACACTCTCAAAATCTTACCTACATTCTTTAACAAGTTCACATTTTGATCACAATTATTCAACACCCACATTCCAATTCTTCCATAATCCATCTGGGTCTCTCAAATTCCACATTTTTCCATTCCACACATCACGTGCTAATAAACCCAAAACCACCAACCCAGATGCCGAAACAATCTGCAAAATCTTATCCACCAATCCCGATTCACCCATCGACATCTCTCTCGCTAACTTTCCGGTAGAGGTATCACCGGAGCTTGTGGTTGATGTCTTGAACAAACTCAGCAATGCTGGTATTCTTGCTCTTTCGTTCTTCCGTTGGGCGGAGAAACAGAACGGGTTCAAGCATAATACAGAGAGTTTTCATGCTTTGATTGAAGCATTGGGTAAGATCAAACAGTTCAAGATGATTTGGAATTTGGTTGATGACATGAAACAAAGAAAGTTGTTGAATGGTGACACTTTTACACTCATTGCTCGTAGATATGTTAGAGCTAGGATCATCAAGGAAGCATCAAAGACGTTTGAGAGGATGGAAAAATATGGATTAAAGCCTCAAATTTCAGATTTTAACAAGTTAATTGATGTTTTGTGTAAGTCAAAGTTTCATGTTGAGAAAGCACAGGAACTGTTTGATAAAATGACGCAATGGAATTTAGAGCCGAATCTTAAGTCCTATACTATTTTGTTAGAAGGTTGGAGTCAACAGCAAAATTTGTTAAGGGTTAGAGAGGTTTGTAGAGAGATGAGGGATGAGGGTTTTGAGCATGATGTTGTTACTTATGGTATACTCATCAATGCATATTGTAAGGCTAAAAAATATGATGAGGCTATTGATTTTTATCATGAGATGCAATCAAAGAATATAAGTCCTAGTCCTCATATATATTGTACTTTGATTATTGGTCTTGGTAATGGTAATAGATTGGATGAAGCTCTCGAATTCTTTGAAAAATCGAAGGTTAGTGGATTTCCACCTGAAGTGCCAACTTATAATGCTGTTGTTGGAGCTTACTGCTGGGCAGGGAGGATAGATGATGCTTGCAGAATTGTTGATGAGATGAGAGAACTTGGGATTGGTCCGAATTCTCGAACGTATGACATAATACTTGTTCACTTGATAAAGGGTGGAAGAGCAAAAGAAGCTTACTCAGTTTTCAAGAGAATGAGTAGTGAGATTGGGTGTGAGCCGCGGGTAAGCACGTATGAAATCATGGTGAGGATGTTTTGTAATGAAGACCAATTGGATTTAGCAATGGTAGTTTGGGATGAGATGAAAGACAAAGGAATCCTTCCTGGAATACACATGTTTTCGACGTTGATCATTTCCTTGTGTCATGAAAATAAGTTGGATGAAGCGTGTAAATACTTTCAACAAATGTTGGATGTTGGGATTCGGCCTACTACCAATATGTTCAGTGCTTTCAAGAAAGCTCTAATGGACGCGGGAATGGAGAATACTGTTTTGCATTTTGCTCAGAAAGTTGATAAACTGAGGAATACTTTATTAATCGCTTAA 1560 0.3814 MTLSRSFRRFPNLDTLSKSYLHSLTSSHFDHNYSTPTFQFFHNPSGSLKFHIFPFHTSRANKPKTTNPDAETICKILSTNPDSPIDISLANFPVEVSPELVVDVLNKLSNAGILALSFFRWAEKQNGFKHNTESFHALIEALGKIKQFKMIWNLVDDMKQRKLLNGDTFTLIARRYVRARIIKEASKTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMTQWNLEPNLKSYTILLEGWSQQQNLLRVREVCREMRDEGFEHDVVTYGILINAYCKAKKYDEAIDFYHEMQSKNISPSPHIYCTLIIGLGNGNRLDEALEFFEKSKVSGFPPEVPTYNAVVGAYCWAGRIDDACRIVDEMRELGIGPNSRTYDIILVHLIKGGRAKEAYSVFKRMSSEIGCEPRVSTYEIMVRMFCNEDQLDLAMVVWDEMKDKGILPGIHMFSTLIISLCHENKLDEACKYFQQMLDVGIRPTTNMFSAFKKALMDAGMENTVLHFAQKVDKLRNTLLIA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 411 IPR002885 -
Trre1g05855 519 PANTHER OS03G0856100 PROTEIN 104 404 - -
Trre1g05855 519 Pfam PPR repeat 168 197 IPR002885 -
Trre1g05855 519 Pfam Pentacotripeptide-repeat region of PRORP 393 509 IPR033443 -
Trre1g05855 519 Pfam PPR repeat family 340 384 IPR002885 -
Trre1g05855 519 Pfam PPR repeat family 271 317 IPR002885 -
Trre1g05855 519 Pfam PPR repeat family 204 246 IPR002885 -
Trre1g05855 519 NCBIfam pentatricopeptide repeat 344 376 IPR002885 -
Trre1g05855 519 NCBIfam pentatricopeptide repeat 273 306 IPR002885 -
Trre1g05855 519 NCBIfam pentatricopeptide repeat 239 271 IPR002885 -
Trre1g05855 519 NCBIfam pentatricopeptide repeat 309 340 IPR002885 -
Trre1g05855 519 NCBIfam pentatricopeptide repeat 379 411 IPR002885 -
Trre1g05855 519 NCBIfam pentatricopeptide repeat 450 482 IPR002885 -
Trre1g05855 519 NCBIfam pentatricopeptide repeat 415 447 IPR002885 -
Trre1g05855 519 SUPERFAMILY TPR-like 271 475 IPR011990 GO:0005515
Trre1g05855 519 Gene3D Tetratricopeptide repeat domain 95 216 IPR011990 GO:0005515
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 235 IPR002885 -
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Trre1g05855 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Trre1g05855 519 Gene3D Tetratricopeptide repeat domain 217 368 IPR011990 GO:0005515
Trre1g05855 519 Gene3D Tetratricopeptide repeat domain 369 516 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05855 Trre-Chr1 63251238 63252797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05855 182 498 Glycosyltransferase AT1G05670 26.814 2.34e-34 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05855 1 63251238 63252797 Trre1g05855 1 63251238 63252797 ECH