Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04918 ATGATACAAGAAGATCAAGGACAGTGTTCTTCTCAAACAATCAATAACTTTGAAACCTATCAAGAACAGTTTCTCCTTCAACAACAGATTATGAGACAACAACAAAACACTTTCTCTTTCCCTTCATCAGGTGATAATCATCATCAAGTTTCACCAATCTTTCAACAACCATGGTCTATGCAACAACTTCATCATCATAATCATCATGTTCATGACCCTTTTGTTATTCCTCAACAACAAACTTCATCATCACCATATGCAAGTTTATTCAACAGATCATCAAGGGTTCCTTCTCTTCAATTTGCATATGATCATCATCATCATGGTTCTGAACATCTTAGGATCATATCAGATACACTTCAACATGGATCAGGTGTACCTTTTGGTGGTCTTCATCAAGGTGAACTTGGTAAGATGAGTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCTGCTTCTAAGAGTCATAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAATCATCTTGCTAAGCTTCGTAGCTTGTTACCAAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACATGTAAAAGAATTGAAACGTCAAACATCACTAATAGCAGAAACAAGTCCAGTTCCAACTGAATGTGATGAATTAACAGTAGATGCTGCTGCAGCTGAAGATGATCAAGAATATGGATCAAATGGAAACAAATTTATAATAAAAGCTTCACTTTGCTGTGATGATAGATCAGATCTTTTACCTGAACTAATCAAAACATTGAAAGCATTAAGGTTAAGAACACTAAAAGCTGATATAACAACACTTGGTGGACGTGTTAAGAATGTTTTGTTCATCACTGGTGAAGAAGATGATCATGAATATTGCATTAGTTCAATACAAGAAGCATTGAAAGCTGTTATGGAGAAGTGTGTTGGTGATGATTCTGCTTCTGGAAGTGTTAAGAGACAAAGGACTAATATAATATCAATATCTAATTAG 1005 0.3572 MIQEDQGQCSSQTINNFETYQEQFLLQQQIMRQQQNTFSFPSSGDNHHQVSPIFQQPWSMQQLHHHNHHVHDPFVIPQQQTSSSPYASLFNRSSRVPSLQFAYDHHHHGSEHLRIISDTLQHGSGVPFGGLHQGELGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTECDELTVDAAAAEDDQEYGSNGNKFIIKASLCCDDRSDLLPELIKTLKALRLRTLKADITTLGGRVKNVLFITGEEDDHEYCISSIQEALKAVMEKCVGDDSASGSVKRQRTNIISISN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04918 334 Pfam Helix-loop-helix DNA-binding domain 154 200 IPR011598 GO:0046983
Trre1g04918 334 Gene3D - 146 207 IPR036638 GO:0046983
Trre1g04918 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 207 IPR036638 GO:0046983
Trre1g04918 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Trre1g04918 334 FunFam transcription factor bHLH30 146 209 - -
Trre1g04918 334 SMART finulus 157 206 IPR011598 GO:0046983
Trre1g04918 334 CDD bHLH_AtAIG1_like 146 224 - -
Trre1g04918 334 PANTHER TRANSCRIPTION FACTOR BHLH30 65 329 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04918 Trre-Chr1 55267008 55270039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04918 86 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 65.556 3.07e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g04918 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04918 1 55267008 55270039 Trre1g04918 1 55267008 55270039 ECH