Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04906 ATGGAATTAGGAGGCAGTTGCACAGATGAAACAACCACCACCACCATCACCACCACCACAAGCAATGACTCTCTTTCGGTATCTCTCATTTCGGCAAAACTATCACCACTGCCAACGACGAATACACTAAGCCGCGTTGGCAGTGGTGCTAGCGCCGTCGTGGATCCCGAAATTTGTGGCGGATCCGGTGAGGCCGAGTCTCGTAAACTTCCGTCATCGAAATACAAAGGCGTGGTTCCACAGCCGAACGGACGTTGGGGAGCTCAGATTTACGAGAAACATCAGCGCGTGTGGCTTGGTACATTCAATGAAGAAGATGAAGCCGCAAGAGCTTACGATATCGCCGCTTTGAGATTTCGCGGAAAAGACGCCGTTACAAATTCAAAAACTCTCACCGGCGCCGGTAACGATACCGATGAAGCTGAAGCCGAGTTTCTAAACTCGCATTCCAAATCTGAGATCGTTGATATGCTAAGAAAACATACCTACGACGATGAGCTTAAGCAGAGCATGCGTGACACGTGCGGTGGAAGACAGCGGCGTAACGGAGAATTATCTGGTGCAGCGTCACGTGGCGCGTGTGATGCTAAAGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACGCCAAGTGACGTTGGGAAATTGAATCGGTTGGTGATACCTAAACAGCACGCGGAGAAGCACTTTCCGTTAAATGCTGTTGCAGTTGCCGTTTCCGGTAACGGAATCTCGCCGTCAGTGGCGGCGGCGAAGGGTTTACTTTTGAATTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAAAGTTACGTTTTAACCAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTCCGAGCCGGTGATGCGGTTCGGTTTTTTAGATCGACCGGACCGGATAGACAGCTCTACATTGACTGTAAAGCAAGAAGCAGTAGTAGTGTTGTCGGTGTCGGTATTGGTGAAGTTGATAGTAATAAAACCGGTGGTTTATTTATTTCGGTCCGACCGGTAGTTGAACCGGTTCAGATGGTTCGGCTTTTTGGGGTGAATCTTTTGAAACTACCTGGTTCTGATGGTACTATTGGTGGTAGCTGCAATGGAAAGAGAAAAGAAATGGAATTTTTTGCTTTAGAATGCAGCAAAAAACCAAAGATAATTGGAGCATTATAA 1197 0.4779 MELGGSCTDETTTTTITTTTSNDSLSVSLISAKLSPLPTTNTLSRVGSGASAVVDPEICGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAALRFRGKDAVTNSKTLTGAGNDTDEAEAEFLNSHSKSEIVDMLRKHTYDDELKQSMRDTCGGRQRRNGELSGAASRGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLNAVAVAVSGNGISPSVAAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSSSSVVGVGIGEVDSNKTGGLFISVRPVVEPVQMVRLFGVNLLKLPGSDGTIGGSCNGKRKEMEFFALECSKKPKIIGAL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04906 398 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 69 371 IPR044800 GO:0003700
Trre1g04906 398 Gene3D - 192 325 IPR015300 -
Trre1g04906 398 SMART B3_2 203 318 IPR003340 GO:0003677
Trre1g04906 398 ProSiteProfiles B3 DNA-binding domain profile. 203 319 IPR003340 GO:0003677
Trre1g04906 398 MobiDBLite consensus disorder prediction 173 192 - -
Trre1g04906 398 CDD B3_DNA 202 304 IPR003340 GO:0003677
Trre1g04906 398 Gene3D AP2/ERF domain 73 130 IPR036955 GO:0003700|GO:0006355
Trre1g04906 398 FunFam AP2 domain-containing protein RAP2.8 73 130 - -
Trre1g04906 398 SUPERFAMILY DNA-binding domain 73 127 IPR016177 GO:0003677
Trre1g04906 398 Pfam B3 DNA binding domain 203 309 IPR003340 GO:0003677
Trre1g04906 398 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Trre1g04906 398 SUPERFAMILY DNA-binding pseudobarrel domain 201 317 IPR015300 -
Trre1g04906 398 SMART rav1_2 74 135 IPR001471 GO:0003700|GO:0006355
Trre1g04906 398 CDD AP2 73 127 IPR001471 GO:0003700|GO:0006355
Trre1g04906 398 ProSiteProfiles AP2/ERF domain profile. 74 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04906 Trre-Chr1 55105003 55106199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04906 6 398 B3 DNA Binding Superfamily AT1G25560 57.143 4.10e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Trre1g04906 B3 2.3e-25 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04906 1 55105003 55106199 Trre1g04906 1 55105003 55106199 ECH