Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04903 ATGGGTTTCTCTGATTACATCCAAGCTTTAGAAGAAGAACGACGTAAGATTCAAGTTTTCCCTAAAGAACTACCCCTTTCTTTAGAACTCGTTACACAAGCTATTGAAGCTTGTAGACAGCAATTATCTGGAACAACAACTGAGTATAATTTGAATGGACAACAATCTGAGTGTTCTGAACAGACAACCTCAACAGATGGACCTGTTTTGGAAGAGTTTATACCAATTAAGAAAAGGGCTTCTCCTTATTGTGAACAAGTTTATGATGATGATGATAATGATGAAGAAGATGATGAACAACATTCTCATCATAAACAACAAAAGATTTCAATGGATGATAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATCCAGATCCTCCTTCTCATGAGGATGTTACTAGGAAAGTAGTACTACCACCTGTGTTGGAATTGAAGAGAAATGGAAGTGGTGGTGGTGCTTTTCATCCATTTCAAAAAGATGAAAGAGTTAACAATAATAATAAGACATGTGAATTGTTGAGTAAAGGACAACCCTCTTCGATCGGTGTAGCTGCTGCGAGTTCTAATGCGGCTACTGTTACCACCAGTAACAATGCTGGAAACTGTAAAAGAGATGAGAAAGAGGAAAAGAGAAAGCAGCGCCGATGCTGGTCGCAGGAGTTGCACAAGCGCTTCTTACAAGCACTTCAACAACTTGGAGGTGCAGATTCTGCAACACCAAAGCAAATTAGAGAGCTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTTTGCATACAAGACGACCAAGTCCATCAAACAACGAAAGTGCCAATTCACAAACAGCAGCACCTTTTGTCCTTGTAGGAAACATTTTTGTCCAACAACAAGAATATGGTGGGGTAGCATCATCAACAACATCAGGGGAAATGACAAAGGTTGTAGCACCTTCTGGAATCTATGCACCAGTCGCCACACATCCTCCTCCAGCCGCAACAATTAAGAAGCCAGAGTTTAAAAAGTTTGATCATTCAATCTCAGAAGAAAGAGCTAATAATAACAGTGAAGGTGCTGTTCATTCAAATTCACCTACATCATCATCTTCTACACATAATACTACCAATACTTCCCTTGGCTATTGA 1158 0.3921 MGFSDYIQALEEERRKIQVFPKELPLSLELVTQAIEACRQQLSGTTTEYNLNGQQSECSEQTTSTDGPVLEEFIPIKKRASPYCEQVYDDDDNDEEDDEQHSHHKQQKISMDDKKKSDWLRSVQLWNPDPPSHEDVTRKVVLPPVLELKRNGSGGGAFHPFQKDERVNNNNKTCELLSKGQPSSIGVAAASSNAATVTTSNNAGNCKRDEKEEKRKQRRCWSQELHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSPSNNESANSQTAAPFVLVGNIFVQQQEYGGVASSTTSGEMTKVVAPSGIYAPVATHPPPAATIKKPEFKKFDHSISEERANNNSEGAVHSNSPTSSSSTHNTTNTSLGY 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04903 385 MobiDBLite consensus disorder prediction 196 216 - -
Trre1g04903 385 FunFam Myb family transcription factor 215 273 - -
Trre1g04903 385 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 273 IPR017930 -
Trre1g04903 385 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 357 IPR044787 GO:0003700|GO:0006355
Trre1g04903 385 MobiDBLite consensus disorder prediction 356 385 - -
Trre1g04903 385 MobiDBLite consensus disorder prediction 98 115 - -
Trre1g04903 385 MobiDBLite consensus disorder prediction 339 355 - -
Trre1g04903 385 NCBIfam myb-like DNA-binding domain, SHAQKYF class 216 271 IPR006447 GO:0003677
Trre1g04903 385 MobiDBLite consensus disorder prediction 331 385 - -
Trre1g04903 385 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
Trre1g04903 385 Gene3D - 215 273 - -
Trre1g04903 385 MobiDBLite consensus disorder prediction 87 115 - -
Trre1g04903 385 SUPERFAMILY Homeodomain-like 214 274 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04903 Trre-Chr1 55067741 55069564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04903 5 341 G2-like Transcription Factor Family AT1G68670 47.500 3.10e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre1g04903 Myb_DNA-binding 2.6e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04903 1 55067741 55069564 Trre1g04903 1 55067741 55069564 ECH