Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04108 ATGTCAAACATCACAAGTTGTGATAGTGAGAGCTTCTCTACAGAGAATAACAGAGAAGATGGAGTTAAACAGCTACAACAAACTGAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACAACAACAACAACAAATAATAACAGCAATGGTTCCAACACTAATTTACAACCACCTCTTAAGAGGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTTGTATGTGAAATATGCAACAAAGGTTTTCAAAGAGACCAAAACCTTCAATTGCACAGAAGAGGACACAATTTACCATGGAAGTTGAAACAGAGAACAAGTAATGAAATTATAAAGAGAGTTTATGTTTGTCCTGAACCTTCATGTGTTCATCATAATCCAGCAAGAGCACTCGGTGATCTTACTGGTATTAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATTTGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATATTTTCAAGAAGAGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCGTTAGCTGAAGAAAACAACAAAGCAAACGAAGTGTCAAACTTGCAACAAATCCCAAATCTTGTTTCTTCATTATTACCTATAAACCCTCCACAAATAGTTGGAACTTCATCAGAAATATTCAACAACAATCATTCAGATCACAAACATCCATTATCATCACTTCCTGCAAAACCCTTCAACAATAACATATTCACTACAAGTCTTTCATCTTCAACTTCATCTCCTTCTCTTCAACTCAGTTCAAATAATTCACTCAACAATATCTTGGAAGAAAATGGTTCACTCCATTTATCTGCTGCTACTTCACCTCACATGTCAGCTACTGCATTGCTTCAAAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATAATGCCGGTATGAGTATGCCGGAAAAATCCATTGCTGCTAACATGATGGCGCCGCCGTTGTTCGGTGTGGCGCAACAACAAGGACATGCTTTCATGAATCACTACATGCAGCAGCAGCAGCAGTATAACAATAATAATTTCAATGCAAACGGGATGATAAATGGAGGAGGAGGAAGTGTTAATGGATCAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCCAAGATTATAGAACAAAATAATCAAACCCAAAGCAGCATTAATAGTGTTGGAGGAGTGGGAGTAGGAGGAGGAGGAGGGGGTGCATCAAGTAATAATAATGTCGTTATGAACATTGGTGGAAGTAAGGGAAGTGGTGGAGATGTAATGACATTGGATTTGTTGGGGATAGGAGGGGGAGGTGCACATGGAAATTTCTATGGAGGAGGGGGTACACAACAACAACAACAACAGGCAGAAAGTGCTGCTGCAGCAGCTGATGAAGTTTGGAGAAATTGGTCAACAAAGAATGGAGGATTTGAATCTTTTTCAGCAACAAGCAACATTTGA 1599 0.384 MSNITSCDSESFSTENNREDGVKQLQQTEILGQFHSPHSHTSTTTTTNNNSNGSNTNLQPPLKRKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSNEIIKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEVSNLQQIPNLVSSLLPINPPQIVGTSSEIFNNNHSDHKHPLSSLPAKPFNNNIFTTSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNNAGMSMPEKSIAANMMAPPLFGVAQQQGHAFMNHYMQQQQQYNNNNFNANGMINGGGGSVNGSMNGVDMFNAILDQSKALSKIIEQNNQTQSSINSVGGVGVGGGGGGASSNNNVVMNIGGSKGSGGDVMTLDLLGIGGGGAHGNFYGGGGTQQQQQQAESAAAAADEVWRNWSTKNGGFESFSATSNI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04108 532 Gene3D Classic Zinc Finger 147 227 - -
Trre1g04108 532 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Trre1g04108 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Trre1g04108 532 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Trre1g04108 532 MobiDBLite consensus disorder prediction 1 75 - -
Trre1g04108 532 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Trre1g04108 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 501 IPR031140 -
Trre1g04108 532 Gene3D Classic Zinc Finger 92 136 - -
Trre1g04108 532 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Trre1g04108 532 MobiDBLite consensus disorder prediction 1 62 - -
Trre1g04108 532 SMART c2h2final6 168 188 IPR013087 -
Trre1g04108 532 SMART c2h2final6 133 163 IPR013087 -
Trre1g04108 532 SMART c2h2final6 92 114 IPR013087 -
Trre1g04108 532 FunFam protein indeterminate-domain 12-like 71 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04108 Trre-Chr1 46291755 46295135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04108 42 340 IDZ Gene Family AT3G50700 55.786 2.82e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g04108 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04108 - - gmx:100813556 578.941