Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g02286 ATGGAGAGTGAGTGGAAAGCTAATGAGATATCACCAAATTGTCCAAGATGTGGTTCATCCAACACAAAATTCTGCTACTACAATAACTACAGTTTAACTCAACCAAGATACTTTTGCAAAGGATGCAGAAGGTATTGGACAAAAGGTGGATCCCTCAGAAATGTTCCTGTTGGTGGTGGCTGCAGAAAAAACAGAAGAGGTAACAACAAAACCTTATTAAGACAACAATCCTTTGATTCTCTCACTTTCAAAAATTCTGACACAATTGGTCATCATTCTTATGATCCTATTTTGAGGACTAATAATATTATTTCTTCTTCTTCTTGCTCCTCATTGGTGAATACTGATAGACCAAATATTGATCTTGCGTTAGTTTATGCAAATTTCCTCAATAAAAAGCCTAATTCTCAGAATAATTCTCATCAAATGGAAAAAAGACCTTTTGGTCCTTCTTTAGAAAATTCAAGGCTATCAAATGTTGAAGTTGGTACAAGTAGTTTCAATTTGTCTGAAATTGAAATTGGTCTCAAAGGATGTTTGAATCTTAATCAAGAACAATTACCATCCACAATAACAAATTTTAGTGAGGTTGAGAATAATCAAATGTATTGTAGTGAGTTTCATTCTATGGAGATTCTTCAAAAAGATAGAATTGATCATCAATTACAATGTAGTAATCATGATGATAGTGTGAATTTTGAGCTTCCACCTTTACCAGGTGAAGAGGATTCATCATCACATGATCATGTTTTGTGGTCCAATTCTGAAATGATGATGAACCTTCCATTTCAAGTTACTCAACCTCCACCACCACCACTTCTTGGACCTGATCAAATTCATGATGCAGACTTGTTAATTGGTAATTGGAGTCCTTTTGATTTTACAAGGGATGCTTCTTTTTCTAGGCCTTGA 912 0.3454 MESEWKANEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNNKTLLRQQSFDSLTFKNSDTIGHHSYDPILRTNNIISSSSCSSLVNTDRPNIDLALVYANFLNKKPNSQNNSHQMEKRPFGPSLENSRLSNVEVGTSSFNLSEIEIGLKGCLNLNQEQLPSTITNFSEVENNQMYCSEFHSMEILQKDRIDHQLQCSNHDDSVNFELPPLPGEEDSSSHDHVLWSNSEMMMNLPFQVTQPPPPPLLGPDQIHDADLLIGNWSPFDFTRDASFSRP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g02286 303 MobiDBLite consensus disorder prediction 135 154 - -
Trre1g02286 303 ProSitePatterns Zinc finger Dof-type signature. 14 50 IPR003851 GO:0003677|GO:0006355
Trre1g02286 303 ProSiteProfiles Zinc finger Dof-type profile. 12 66 IPR003851 GO:0003677|GO:0006355
Trre1g02286 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 187 IPR045174 GO:0003700|GO:0006355
Trre1g02286 303 Pfam Dof domain, zinc finger 13 66 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g02286 Trre-Chr1 18286430 18287341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g02286 5 298 C2C2-Dof Transcription Factor Family AT3G52440 38.235 5.16e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre1g02286 zf-Dof 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g02286 - - psat:127092130 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g02286 1 18286430 18287341 Trre1g02286 1 18286430 18287341 ECH