Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00415 ATGGCGAATAATCTCAATCAACAAGAACAAGACTCACTTTCTTTCACCGATTTTCCCGAAGATATTCAGCTATGCATCCTTTCATTTCTGGGTCCAACTGAAATCGCCACGTTCGCCTGCACCTCTAAGCAATTCGGAACACTCTGTTCCCATGATTCCAAGCTATGGTTCACCCTTTGCGATCGAAAATGGGGCTCCAAAACCCAAATCTCAAAATGGGGAAAAGGGAAAATCACCTACAAACATCTCTACAATACTCTTCATGAATGGGATAATCTCATTGGTTTCTGGCGTCGTAGCGGTCCAGGAAGTGCTGTGATTTCGTCTCCGTCGTTGGTTTTCTTCGAGTGGGGTGAATCGTTCATTTCTGGTTCTAGGGTTTCACCTTTTCAATCTGGGTATGAAGTTAAAAAGGTACCTTTTTTGAAAATGGGTATTTCTGAAGATGGACAATTTGTTAATCTTTTAGATCCTGATGGTAGAGCTGATTTGAATTTGGATTTTGGTGATAATGGGTTGAATGAATTGATTCCTGTCAATGTTTGTTTTATGGGGAAGACTCATTTTGTTGTGGAGGAGAATTTGTTTGGGAGAAATTCACCTAGTGGTGAGGATTGTGGTTTTGGTGGAGAGGATTGGATTGGGGTTAGGAGTGCAAGTGGATCTCCACGATCTCCACCGGATCGGTTGATGTTGGAGATTTATCAGCATTTGGCCAACCGCGTTAGTCCTGGAAGCGATCGATCCAGGAGGCAGAGAAGGAAGGAGAAGGAAAGGATGGCTAGGAGGAAATGGGAGCCTGAGCATTTTGTCAAGATTGTGAATTGCTCCCCGACAGCGGCACGGCCTTTGCAAGGTCTTTGGAAGGGAATTTGTGCAGACATGAGTTTAGCTTTTTACCTCGTGGCTTATGATGAAATTGGGGGCATTGCCTGCCGACGACTTGGGGATCCTCCTCAACGTTTCTCTACTTATGCTCCGGTTTTCTGGACATCCAGTGCTTCCTTTCTGGAATCTCCCTTTTCTCTGGAGGAAGAATCTCTGTATGACAGTCGCATTCATCTTCAACCAGTTCAACCACACAATGGAAATCACGAGCAGTTCCATATGTCAGACATTGAAGGGGTAAATCACATTCAGCAGTTCCATTTGTCAGACAGGGAAGCGGTAAATCGAATTCTTCACATAAACTCAAGTTATGATTTAGTTATTGCAGACCTTGCTGGAGCAATGAATCCAAGGAATGCTGAGGGAAGGATTTGGCAGTACCAGGATGGTACTTTTGGATTTGGATTCATTCGTGACAATTTTGTCATAGACATGAAAAATATTGTCCGTGATGGTTGTATTGTGGATGCAGTAAACTCTTCTTCTGATTGA 1380 0.4355 MANNLNQQEQDSLSFTDFPEDIQLCILSFLGPTEIATFACTSKQFGTLCSHDSKLWFTLCDRKWGSKTQISKWGKGKITYKHLYNTLHEWDNLIGFWRRSGPGSAVISSPSLVFFEWGESFISGSRVSPFQSGYEVKKVPFLKMGISEDGQFVNLLDPDGRADLNLDFGDNGLNELIPVNVCFMGKTHFVVEENLFGRNSPSGEDCGFGGEDWIGVRSASGSPRSPPDRLMLEIYQHLANRVSPGSDRSRRQRRKEKERMARRKWEPEHFVKIVNCSPTAARPLQGLWKGICADMSLAFYLVAYDEIGGIACRRLGDPPQRFSTYAPVFWTSSASFLESPFSLEEESLYDSRIHLQPVQPHNGNHEQFHMSDIEGVNHIQQFHLSDREAVNRILHINSSYDLVIADLAGAMNPRNAEGRIWQYQDGTFGFGFIRDNFVIDMKNIVRDGCIVDAVNSSSD 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00415 459 SUPERFAMILY F-box domain 8 90 IPR036047 GO:0005515
Trre1g00415 459 Gene3D - 1 92 - -
Trre1g00415 459 SMART fbox_2 18 59 IPR001810 GO:0005515
Trre1g00415 459 MobiDBLite consensus disorder prediction 242 261 - -
Trre1g00415 459 PANTHER F-BOX ONLY PROTEIN 48-RELATED 9 288 IPR045118 GO:0019005|GO:0031146
Trre1g00415 459 ProSiteProfiles F-box domain profile. 12 59 IPR001810 GO:0005515
Trre1g00415 459 Pfam F-box domain 16 53 IPR001810 GO:0005515
Trre1g00415 459 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00415 Trre-Chr1 3000811 3002628 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00415 1 3000811 3002628 Trre1g00415 1 3000811 3002628 ECH