Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00407 ATGAAAAGTTTTATTTTAAATTTATTAGAACTACAGTTAGAACTACTAAGATTCAAAGCTGTACTTCAAATTGCTCAGCAGCAACCAAAGCAAGCTATAGAGACCTACAGAACCTTGTTAACAGTAATAACAGCCAAAAAGGAGCTTTTGCTTCAAGCCAAGAACTCCGAGTTTGATCAAGCAAAAATTTTCAAGGATGAGGCATTAACGGCGCGAAAGTTGGAAATAGAAGCATGGCAGGATTTGGCAACAATTTATACAGATCTTAATTCCTTTCTTAATGCAAAAGCTTGTGTTGACAAAGCCCAATTACTTGAGTTTTTCTCTCCGAGAAGTTGGCATGTTACAGGGAAGTTGTTTGAAGCTCAATCATTAAACAAGGAAGCTTTTATTTCGTATTCAATCTCATTGTCAATAGAACCTGATTATATTCCTAGTATCAATTCAACTGCAAAGTTGTTGATTAACCTTGGTATGGAATCACTTCCATTGGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACTATGATGCGTGGTTCAATCTTGGAGTGGTTTCGAAAATGGAAGGTTCGTTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGTTGTCGCTTTCAAATCCAGTGCAAAAGTTTGAGTGA 660 0.3652 MKSFILNLLELQLELLRFKAVLQIAQQQPKQAIETYRTLLTVITAKKELLLQAKNSEFDQAKIFKDEALTARKLEIEAWQDLATIYTDLNSFLNAKACVDKAQLLEFFSPRSWHVTGKLFEAQSLNKEAFISYSISLSIEPDYIPSINSTAKLLINLGMESLPLARSFLMNALRLEPTNYDAWFNLGVVSKMEGSLQQAADCFQAAYELSLSNPVQKFE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00407 219 Pfam Tetratricopeptide repeat 77 103 IPR019734 GO:0005515
Trre1g00407 219 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Trre1g00407 219 Gene3D Tetratricopeptide repeat domain 5 216 IPR011990 GO:0005515
Trre1g00407 219 PANTHER PROTEIN NPG1 12 219 IPR043376 -
Trre1g00407 219 Coils Coil 8 28 - -
Trre1g00407 219 SMART tpr_5 180 213 IPR019734 GO:0005515
Trre1g00407 219 SMART tpr_5 13 46 IPR019734 GO:0005515
Trre1g00407 219 SMART tpr_5 76 109 IPR019734 GO:0005515
Trre1g00407 219 SMART tpr_5 110 143 IPR019734 GO:0005515
Trre1g00407 219 SUPERFAMILY TPR-like 14 213 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00407 Trre-Chr1 2926489 2927786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00407 12 218 Calmodulin-binding Proteins AT1G27460 50.725 2.47e-63 206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00407 1 2926489 2927786 Trre1g00407 1 2926489 2927786 ECH