Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00404 ATGGGAACGGAGAGTTACACTTACATGGGACGGAGTTTCAACGAATTCACCATCAACGATGATTCTACTTCTTCAGCTTTCAGCGACTGTAACAGTGACAGATCCGGCGAATTCGCCACCACTTCTTCTCAATCCAGACGACTCCTTATCGCCTGTGCTTCCGAAAATTCAGATGATCTCATCCGTCAACTTGTTTCCGATCTTCACTCCGATTCAATTGAAGAACAAAAACAAGCCGCCATGGAAATCCGGTTACTCGCGAAAAATAAACCGGAAAATCGAATTAGAATCGCTAAAGCCGGCGCAATTAAACCTTTAATTTCACTCGTTTCTTCACAAGACCTTCAACTTCAAGAATATGGCGTCACAGCAATTTTGAATCTCTCTTTATGCGACGAGAATAAAGAGTTAATAGCTTCTTCAGGAGCGATTAAGCCTCTTGTTAGAGCGTTAAACTCGGGTACTTCAACTGCAAAAGAGAACGCGGCATGTGCGTTACTTCGTTTATCTCAGGTGGAAGAGAACAAATCAGCGATTGGAAGATCCGGTGCCATTCCGTTATTAGTGAACCTTCTAGGAAGCGGAGGAATCCGAGGGAAGAAAGACGCATCGACGGCGCTGTACACGCTGTGTACAGTGAAGGAGAATAAGATGAGAGCGGTGAAAGCAGGAATTATGAAGGTTTTGGTTGAGTTAATGGCGGATTTTGAATCGAATATGGTGGATAAATCAGCGTATGTTGTTAGTGTATTGGTGTCGGTGCCGGAGGCAAAGACGGCGCTGGTGGATGAAGGTGGCGTTCCGGTGTTGGTAGAGATTGTGGAAGTTGGATCACAGAGACAGAAAGAAATAGCGGCGGTTATTCTGTTACAGCTTTGTGAGGATAACGTGGCTTATCGATCCATGGTGGCTCGCGAAGGTGCGATTCCACCTTTGGTTGCTTTGACTCAATCGGGCACCAATCGCGCAAAACAAAAGGCTGAGAAACTAATTGAGCTTCTGAGGCAACCAAGATCTACACGTACTACATCAGAAATTACATGTGAACCCTAG 1053 0.453 MGTESYTYMGRSFNEFTINDDSTSSAFSDCNSDRSGEFATTSSQSRRLLIACASENSDDLIRQLVSDLHSDSIEEQKQAAMEIRLLAKNKPENRIRIAKAGAIKPLISLVSSQDLQLQEYGVTAILNLSLCDENKELIASSGAIKPLVRALNSGTSTAKENAACALLRLSQVEENKSAIGRSGAIPLLVNLLGSGGIRGKKDASTALYTLCTVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVPEAKTALVDEGGVPVLVEIVEVGSQRQKEIAAVILLQLCEDNVAYRSMVAREGAIPPLVALTQSGTNRAKQKAEKLIELLRQPRSTRTTSEITCEP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00404 350 Gene3D - 39 347 IPR011989 -
Trre1g00404 350 SMART arm_5 172 212 IPR000225 GO:0005515
Trre1g00404 350 SMART arm_5 213 253 IPR000225 GO:0005515
Trre1g00404 350 SMART arm_5 90 130 IPR000225 GO:0005515
Trre1g00404 350 SMART arm_5 131 171 IPR000225 GO:0005515
Trre1g00404 350 SMART arm_5 296 336 IPR000225 GO:0005515
Trre1g00404 350 SMART arm_5 254 294 IPR000225 GO:0005515
Trre1g00404 350 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Trre1g00404 350 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Trre1g00404 350 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Trre1g00404 350 PANTHER U BOX DOMAIN-CONTAINING 60 335 - -
Trre1g00404 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Trre1g00404 350 FunFam U-box domain-containing protein 4 45 349 - -
Trre1g00404 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Trre1g00404 350 SUPERFAMILY ARM repeat 57 332 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00404 Trre-Chr1 2872163 2874055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00404 25 338 U-box Gene Family AT2G23140 47.531 4.68e-86 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00404 1 2872163 2874055 Trre5g04927 5 50939764 50942670 PCT