Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00398 ATGTCCTCCATTGACCAACCAATGAAGAAGCGAAAGCTCCACGACTCTCCACTGCCTGAAACTACCACCCCCTTTCTGCAAACCCTATCTACTCCGACGTTATCTCAAGACGAAATTCTCGCCAAACGCAGAAACAAAGATGCAATTCGAAACGTTTACGAAGTTTACAGACGAATTAAACGTTGTCTCCTTCAGAAACAAGCTCCCTCTACACCTGACCTTGACCAGAGCTTTCTTGCTCTCATCGCTTCTTCAAGAGGTTGTATGAGTGTACAGAGAATTGTGGCCGATTTAATTCCTCGATATGCTTGTCACTGTCCAAAAGCTTTGGAAGCCGCAACTAAAGTGGTTATCAATATGCATAACTGGAGTTTGGCTTTGATCACTAAGGAAGAGGATTCCAGTGGTGTTGCATTTGAAACTGCTAAAGCTTGTATTTTTGGATTGGCTGATATTTGCTGCGTTGCTTCTTCAGTAGCATCAACATCAGCTGTAACTAGAGGAATTCGCTCAGCAGTTTTTCAAAATGTGCTCACCTTTTTTGTTGCCTTATTTGAGGGAAAGGATGTATCAAGGATGATTGACAAGAATTTCCTGAATGTGCAAGATAACCCTGAGGTCTTTTCTGAATTGAAACAAAAGGTTTTAGATGAAGACAATTCTTCATTGACTAAATTGTCTAAGTTTCATACACTATGTATACTTTGGGTATTCTTCTCTTGTCCAAAAGAATTGCTTGCAGCTTGTTTGGAACTCTTAGGCTCCGCCACAAAAGAGGGAACTTTTAACGAAGGACAACGTTTTATGAGCATGGTGACTAGCTTGCTTAATGACGATGAATCAGTTCACCCTTTGGGTAGAGAAAACGATGGACCTAAATCATGTACCGATTCTATTGGGCAAGGCATCAAAGAGATTGAGGTTGGCGAGAAAGTTATCACCGATGACAACCATATATCCGATACTATTCAAAAGAGCTGCTTGCTTATGCTGGTTCTTAACAAGGACCCCTCACTGCGGAAATGGACTCTGCGTCGATGTAAGAAGTTACTTGACTCACTCACTGATGCTTCACTGGAAACTGCACCAGTATTGCAAGGAATTCTTGGAATGTTTGCACAACAGACAGAGTTAGAAGACTGTCAAGTAGATAGTGATGAAGACAAGTCGGAATCTTCAATTTTCATGAATAGAAACTATGCAGTTCCTAGGATCTCTGAGGAACATGAAAGTATTGGTGAAACATCACAAAAAGCAGGTTCGCATTTTGATAATGGAGGGATATCAAGGTCTGTGAGCATTGAGAAAGGCGAGAAAGGTGATATGCCTAATGTTAGATGTTCCACACCTAGGGACTCTGTAAGCCATCAGATATTCTCACCTACAGTTAGAACAGCGGTAGACTATCGAAGTAACTCATTTGAAGGTAGAAATGAGTTCCCAATTGTCGAGAAAAATCAAGTTTTGAATATGAATTTCAGTTCACCTCTGTCGAGGTCCTCTAGTGGAGCTGTCAGCAATGTTTTGGCTTCTCCAAATCACCATTTTATGTCACCGACTTCTTTAACCAAAAGTCAAATTGTTTGGTGCGGTGATGGGGATCCTGCTGCTGTAGATATTGTTGCTGCTTCTAAGCAGCTATGGGTAGGTTGTGTAGCACTTGACATGCCCGAAAGCCATATTAGGTTTCAAATAGAGAGGTTTGGTCCTATTGAAAAGTTTATATTCTTCCCATTGAAAGGATTTGCTTTAGTTGAGTACAGAAGGATAATTGATGCGATAAAAGCTCGACACTATGCACCTGGAAATTTTCCTTGCCGTGTAAAATTCATGGACATAGGACTTGGTACTAGGGGTGCAATAAATGGTGTTGCAGTTGGCTCTAGTTTTCATATTTATGTTGGAAATATTTCCAGTCAATGGGCCAAGGATGAGATTCTTCATGAATCAAGGAAAGTAGTTTATAAGGGTCCTCTCACAGTGATTGATCTTAGCTTTGAGTTTGCATTACTTATGGAGTTTGAAACCCCCGAAGAAGCTGCCTCCGTAATGTTGCATCTGAGACAGTTCCGAAGAGAAAGAAGTAATTATAATCCGCATTTTGGTCCAGGAACAGTTAATGTTGTATCTCCTCATTCTCGAACTTTACCTGGGAGTCCTGCTGACAGCAGTCGAACAAGAATGTCTCACTTGTGTAACATACTATCTTCATTGCGTGCAAAGTATAATATTAATCAAAACACAGGTCTCCATGATAATTATATTATTGGAAATAGTTGTACTTCTTCCATGTGTGAGGAAGATACAGTGCCATCCAGCACTCTTTGGATAACTATTCCTCATAGTAGTTCCCAGTTCCTCACAGATGATGAGCTAATGAGTATTTGCAACCTTGCTATTGGAAACTCTGGTTCCATTGCACGGTTGACACAAGCAAAAATGAACATGGGAGGTGGTTGGTTTGTGGAATGCAGTAATGTTGATGGTGCAGTTTCCATTTTAAAGAATCTGCGTGCTTGTCCAGGATTGTTCTTCCAAATAGAATTCAGCAAACCGGGAAATCAGAATGCTGTACCGTTTTCGATTAAACCTGAAAACCATGCTATGGAGCTTGTTTCCCCCAGACTAAATGCTGAGAATCATGGTAGTGGAGTGCATGGTGCACCTCTGTCTCAATCAAATCGCCACTTCCCTGATTCAAGGGAGATATCAGAAGTTGGAGGAAGGAACCCTGATGGTTATAATCATTTATCACTGGATCCTCATCAAGGAGGAAATGTTCCACATGTATACTCTGGAGCACATGGACCTTCCATTCCACCACCACAACAAATTCAGTCATCTCCTTTCACCCGCCCTGTTTATGTTCCTCCAAATGGGCCATGGGATCCCCATGGCATGAATAATCAGTTACCTGTCAACCAATTCCAGACAGGAGTAATGCCAAATAATTTTAATGGCAGTCCTTTTATACCTGCTTCAGTAACTCCAATTGGTCAGATACAAGGAACTCCAATGCAACCATATAACCAACAGATTCATCCGTCAATTGTACCACCACCTTTGCCACCTCCTCAGCCTGAAATGCCACCTCTTCATCCGCATCCTTCTTCTCTCCCTCCTCTACCCCAGACACAACCACCCTTGGTTCCTCCACCACCTGGTTCTCCTCCTCCACCACTGCCTGTCCAAGAACCAGTTAATATGGAATGTTCAGGGCAGACACTGCAGTATCAATGGCAGGGCAATCTCTGTAAAAGTGGAGTTAGCTACTGTACAATTTATGCATGCAGAGCAGATTCAAATATTTGCAGATATTCGAATGCCACACCCGAGCCTTCCGGATGGCCCACCAAATTAGACATGACTAAACGCACAGATTTTCGACATGTGCAATCAACATTTGCTGCTACTCCATCTGATAGAAGGGAAGTGTGCCGTTTAATCCCATCTTCCACAAGTGACGACAGAAGGTTTCAGGATTTCGTATCATATTTAAAACAGAGGGATTGTGCTGGAGTTATTAAAATCCCAGCTTCAAAATCTATATGGGCAAGGCTGCTATTTATACTTCCTCATTCACTTGAAATGTGCTCGTTGCTTTCTATTGCACCCGATCCATCTGATTGCCTAATTGCTTTAGTTTTACCCAAAGAAACAAACTCTGAGTGGATGTGA 3678 0.4187 MSSIDQPMKKRKLHDSPLPETTTPFLQTLSTPTLSQDEILAKRRNKDAIRNVYEVYRRIKRCLLQKQAPSTPDLDQSFLALIASSRGCMSVQRIVADLIPRYACHCPKALEAATKVVINMHNWSLALITKEEDSSGVAFETAKACIFGLADICCVASSVASTSAVTRGIRSAVFQNVLTFFVALFEGKDVSRMIDKNFLNVQDNPEVFSELKQKVLDEDNSSLTKLSKFHTLCILWVFFSCPKELLAACLELLGSATKEGTFNEGQRFMSMVTSLLNDDESVHPLGRENDGPKSCTDSIGQGIKEIEVGEKVITDDNHISDTIQKSCLLMLVLNKDPSLRKWTLRRCKKLLDSLTDASLETAPVLQGILGMFAQQTELEDCQVDSDEDKSESSIFMNRNYAVPRISEEHESIGETSQKAGSHFDNGGISRSVSIEKGEKGDMPNVRCSTPRDSVSHQIFSPTVRTAVDYRSNSFEGRNEFPIVEKNQVLNMNFSSPLSRSSSGAVSNVLASPNHHFMSPTSLTKSQIVWCGDGDPAAVDIVAASKQLWVGCVALDMPESHIRFQIERFGPIEKFIFFPLKGFALVEYRRIIDAIKARHYAPGNFPCRVKFMDIGLGTRGAINGVAVGSSFHIYVGNISSQWAKDEILHESRKVVYKGPLTVIDLSFEFALLMEFETPEEAASVMLHLRQFRRERSNYNPHFGPGTVNVVSPHSRTLPGSPADSSRTRMSHLCNILSSLRAKYNINQNTGLHDNYIIGNSCTSSMCEEDTVPSSTLWITIPHSSSQFLTDDELMSICNLAIGNSGSIARLTQAKMNMGGGWFVECSNVDGAVSILKNLRACPGLFFQIEFSKPGNQNAVPFSIKPENHAMELVSPRLNAENHGSGVHGAPLSQSNRHFPDSREISEVGGRNPDGYNHLSLDPHQGGNVPHVYSGAHGPSIPPPQQIQSSPFTRPVYVPPNGPWDPHGMNNQLPVNQFQTGVMPNNFNGSPFIPASVTPIGQIQGTPMQPYNQQIHPSIVPPPLPPPQPEMPPLHPHPSSLPPLPQTQPPLVPPPPGSPPPPLPVQEPVNMECSGQTLQYQWQGNLCKSGVSYCTIYACRADSNICRYSNATPEPSGWPTKLDMTKRTDFRHVQSTFAATPSDRREVCRLIPSSTSDDRRFQDFVSYLKQRDCAGVIKIPASKSIWARLLFILPHSLEMCSLLSIAPDPSDCLIALVLPKETNSEWM 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00398 1225 MobiDBLite consensus disorder prediction 702 724 - -
Trre1g00398 1225 Gene3D - 536 618 IPR012677 -
Trre1g00398 1225 MobiDBLite consensus disorder prediction 1 26 - -
Trre1g00398 1225 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 5 1176 - -
Trre1g00398 1225 CDD SPOC_FPA-like 1079 1217 - -
Trre1g00398 1225 CDD RRM_SF 547 609 - -
Trre1g00398 1225 MobiDBLite consensus disorder prediction 408 430 - -
Trre1g00398 1225 MobiDBLite consensus disorder prediction 881 912 - -
Trre1g00398 1225 Pfam SPOC domain 1074 1216 IPR012921 -
Trre1g00398 1225 SMART rrm1_1 546 609 IPR000504 GO:0003723
Trre1g00398 1225 MobiDBLite consensus disorder prediction 1015 1061 - -
Trre1g00398 1225 SUPERFAMILY RNA-binding domain, RBD 532 604 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00398 Trre-Chr1 2837533 2853176 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00398 1 2837533 2853176 Trre1g00398 1 2837533 2853176 ECH