Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00396 ATGGAACCTATAGTAGGAGCTTTCCCTGATGGAGAATGGGATTTCTTTCGCAAAATGTTTGCTAGTGAAGATTCACAACAATTTCTTGATCAAAATTCACTTCTTCTAGGGGAAGATGATGGATTGAACAATGTAACACAATCCACATTTTACTCTGCTGAAAATGATTGTATGTTTTATTCTTTTGATCATATCTCAAACTCTAACTATATTTCTCATTCTCAAGAGAATAGTTACAATAGCAATTCTAGTGCTAGTGATGATACAAATCAATATTTTAGTTATCCTAATCAAGCATTATTAGAAAATAATGTTAATACTTGTATATCCATGGATGAGAATTTTTTTGCTTCATTTGTCACACCCTTTAATGAGATTGTAATGGAAGAGAATGTGACATTGAACAATATTGAAGATGCTGCTGGAAGTGATGATCATATTTTAGAGAAAAATGATTACACTACTCAAATAATGGAAAATGTTGATTTTCCAAGCAAGAATGAATTGCAAATGCAGCTCAAAAGGAAACTTGATGTAATAGAAGAAAAAATAAACAAGAAATCCGAGAATCCAAAGAAAAAATCCCGTGTTTCAAAAGATCGGCAAGGATGCATGAAAAATGCAAGGTCAAAGAAGAACTTACAAAAAGTTGCTAGCAATGAAGAGATTGCAGAAGAGATTGATAATGGAGGATCAAATGAAAATAGTTCTAATAGTAACATTTCTGAGGATGAAAATGGTTCTCAAGAAAATAGTGGAGGAACCACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGATCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAACGACTAAGAATCTTACAAAATCTTGTACCAAATGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTGCAAGTTCAAATCAAGCTTTTGAGCTCTGATGATATGTGGATGTATGCACCACTTGCTTATAATGGACTTGACATTGGACTCAATCTGAACAATTCTCTACCACTATGA 1062 0.3343 MEPIVGAFPDGEWDFFRKMFASEDSQQFLDQNSLLLGEDDGLNNVTQSTFYSAENDCMFYSFDHISNSNYISHSQENSYNSNSSASDDTNQYFSYPNQALLENNVNTCISMDENFFASFVTPFNEIVMEENVTLNNIEDAAGSDDHILEKNDYTTQIMENVDFPSKNELQMQLKRKLDVIEEKINKKSENPKKKSRVSKDRQGCMKNARSKKNLQKVASNEEIAEEIDNGGSNENSSNSNISEDENGSQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLNLNNSLPL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00396 353 Coils Coil 166 190 - -
Trre1g00396 353 MobiDBLite consensus disorder prediction 229 273 - -
Trre1g00396 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 334 IPR036638 GO:0046983
Trre1g00396 353 Pfam Helix-loop-helix DNA-binding domain 279 319 IPR011598 GO:0046983
Trre1g00396 353 MobiDBLite consensus disorder prediction 184 281 - -
Trre1g00396 353 Gene3D - 271 327 IPR036638 GO:0046983
Trre1g00396 353 CDD bHLH_AtIND_like 270 332 - -
Trre1g00396 353 SMART finulus 275 324 IPR011598 GO:0046983
Trre1g00396 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Trre1g00396 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 341 - -
Trre1g00396 353 MobiDBLite consensus disorder prediction 184 207 - -
Trre1g00396 353 FunFam Basic helix-loop-helix transcription factor 270 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00396 Trre-Chr1 2834248 2835858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00396 195 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 62.914 8.74e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g00396 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00396 1 2834248 2835858 Trre1g00396 1 2834248 2835858 ECH