Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00395 ATGGCTCTTGAAGCACTTAACTCACCCACTTCTACTACCTTTGATGATTCTCCATCTCTACCATGGACTAAACGTAAACGTTCTAAGCGTTCACGTTCATGCACTGAAGAAGAGTATCTTGCTCTCTGTCTCATCATGCTCGCTCGTGGCAAAACCAACGCCCATGATTTCAAGCCGCTCCCGGTAATTGCTTCATCCGTTGACAACAATAGCAACAAACATAGTTACAAATGTTCTGTTTGTAACAAAGAGTTTTCTTCTTATCAAGCACTTGGTGGACACAAAGCAAGTCACCGGAAAAACACCACCGGCGGCGGTGATGAACAATCAACTTCATCAGCCGCAACCACAAGCTCCGCAAATACCGCCGTTGGAAACGGTGGTGTTAGATCTCATGAGTGTTCGATTTGTCATAAATCGTTTCCGACCGGACAGGCTTTGGGGGGACACAAACGTCGTCACTACGAAGGTGTTGTCGGCGGTAGTGGTGGTGGGGGTGCTGCAACTGTCTCTGAAGTGGGGTCCACGCATACTCGTGATTTCGATCTGAATATCCCGGCTTTTCCGGACAAGGTGGGAGAAGATGAAGTTGAAAGTCCTCATCCTGTTATGATGAAGAAGAAGCCTCGTGTTTTCGTGGTCCCCAAGATTGAGATTCCTATTCTCCAATGA 672 0.4732 MALEALNSPTSTTFDDSPSLPWTKRKRSKRSRSCTEEEYLALCLIMLARGKTNAHDFKPLPVIASSVDNNSNKHSYKCSVCNKEFSSYQALGGHKASHRKNTTGGGDEQSTSSAATTSSANTAVGNGGVRSHECSICHKSFPTGQALGGHKRRHYEGVVGGSGGGGAATVSEVGSTHTRDFDLNIPAFPDKVGEDEVESPHPVMMKKKPRVFVVPKIEIPILQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00395 223 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 27 187 IPR044653 GO:0003700
Trre1g00395 223 SUPERFAMILY beta-beta-alpha zinc fingers 75 154 IPR036236 -
Trre1g00395 223 MobiDBLite consensus disorder prediction 92 125 - -
Trre1g00395 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Trre1g00395 223 SMART c2h2final6 76 98 IPR013087 -
Trre1g00395 223 SMART c2h2final6 132 154 IPR013087 -
Trre1g00395 223 MobiDBLite consensus disorder prediction 103 125 - -
Trre1g00395 223 MobiDBLite consensus disorder prediction 1 19 - -
Trre1g00395 223 Gene3D Classic Zinc Finger 73 154 - -
Trre1g00395 223 Pfam C2H2-type zinc finger 132 155 - -
Trre1g00395 223 Pfam C2H2-type zinc finger 76 100 - -
Trre1g00395 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 154 IPR013087 -
Trre1g00395 223 MobiDBLite consensus disorder prediction 1 28 - -
Trre1g00395 223 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Trre1g00395 223 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00395 Trre-Chr1 2814531 2815202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00395 1 219 C2H2 Transcription Factor Family AT1G27730 50.813 6.35e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g00395 zf-C2H2_6 2.8e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00395 1 2814531 2815202 Trre5g04922 5 50909347 50910072 PCT