Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00390 ATGGAGCTTGTAACCGCAAGTGATCTTCTCGTAACTGCATCTGTGGCACTTCTTATTTCATTCATTGTTGCAAAACTTGTTTCCTTAGCCACCACCGACACACATGTTCACGATCAACCGGTTCATCGAGTTCAACAGCGGATGACGGTTCAGTCACCTCAAAGAAAGAGTCGAACCGGTTTTATTAATCCGGTTCATGTTACAGCAATAGCGAATTTAGAAACCGAACAGAATACTGTTGTGTCCGATTCCAACGTTGCTGGCGAGTTTCCACCGACAAACTCAGACGTAATTGACGATACTGTTGATTCCGATTCCAACGTTACCGGCGAGTTACGGCCGACAAATTCATACGTAACTGACGCTAAGGTTGATTCATGTTCTAACGCTGCTGTCGAGTTGCCGCCGACAAATTTAGGCGAAACAGAGGCTAAGGTTGACTCCGGTTCTAACGATGGTGTAGAATCGTCGCCGATAAGCTCAAACAAAGTAGATACTAAGGTTGAATCCGATTCCAACGTTGTTGATGATTTTTCGAAAGAAGAAACTGTCGTGAAAAGTGATGATTCTATTGAACGGGGGAATGATGAAGTGGTGGAAGAAATCAGTGAAGAAAAATCAACTGAGATGTTAGTTTCCGGTGAGGAGAAGGTTGATGATGAAGATGATTGGGAATGGGAAGGGATTGAGAGGAGTGAGGTGGAGAACATGTTTACGGAGGCTACAGAATTTGTTGCTGAGAAAGGGTATATTGGTAATTGTGATGATGATTTGGAGATGGAGTTGTATGGACTTCATAAGGTTGCTATGGAAGGACCATGCCGTGAATCTCAACCAATGGCCCTTAAACTCTCTGCACGTGCTAAATGGAATGCTTGGCAAAAGTTGGGGAACATGAGTCCAGAGGTTGCGATGGAGCGATATATCAGCCTTCTTTCAGATAAATTTCCCGAATGGATGAAGAATACTTCTGCTGGAATAACTGAAGATAAACCCGCAGGATCAGAAGTTTCGGAGTCTGCTGCTACTGATACGAGCTCAGCTTTGTCTCATCAACAAATAATTTTAACCGAAAGGGAACTTGTTCAAGAGTCTGGTGCCCCAGAGCTTATCCCAGATACAAAGTCAGATTTGGAGAACAATGTTAAGAAATGA 1155 0.4346 MELVTASDLLVTASVALLISFIVAKLVSLATTDTHVHDQPVHRVQQRMTVQSPQRKSRTGFINPVHVTAIANLETEQNTVVSDSNVAGEFPPTNSDVIDDTVDSDSNVTGELRPTNSYVTDAKVDSCSNAAVELPPTNLGETEAKVDSGSNDGVESSPISSNKVDTKVESDSNVVDDFSKEETVVKSDDSIERGNDEVVEEISEEKSTEMLVSGEEKVDDEDDWEWEGIERSEVENMFTEATEFVAEKGYIGNCDDDLEMELYGLHKVAMEGPCRESQPMALKLSARAKWNAWQKLGNMSPEVAMERYISLLSDKFPEWMKNTSAGITEDKPAGSEVSESAATDTSSALSHQQIILTERELVQESGAPELIPDTKSDLENNVKK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00390 384 SUPERFAMILY Acyl-CoA binding protein 234 320 IPR035984 GO:0000062
Trre1g00390 384 MobiDBLite consensus disorder prediction 134 170 - -
Trre1g00390 384 Pfam Acyl CoA binding protein 237 312 IPR000582 GO:0000062
Trre1g00390 384 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 234 321 IPR000582 GO:0000062
Trre1g00390 384 Gene3D - 229 336 IPR014352 -
Trre1g00390 384 PANTHER ACYL-COA-BINDING PROTEIN, ACBP 7 371 - -
Trre1g00390 384 MobiDBLite consensus disorder prediction 201 221 - -
Trre1g00390 384 MobiDBLite consensus disorder prediction 89 113 - -
Trre1g00390 384 MobiDBLite consensus disorder prediction 143 168 - -
Trre1g00390 384 MobiDBLite consensus disorder prediction 325 349 - -
Trre1g00390 384 MobiDBLite consensus disorder prediction 361 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00390 Trre-Chr1 2780742 2784747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00390 8 349 Acyl Lipid Metabolism Gene Families AT4G24230 33.607 2.00e-40 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00390 1 2780742 2784747 Trre1g00390 1 2780742 2784747 ECH