Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00375 ATGGGTGGTTGGGCTATTGCTGTTCACGGTGGCGCCGGTGTTGACCCAAATCTTCCTCTTGAACGTCAAGAAGAAGCAAAACAACTTCTTACCCGTGTTCTCAATCTTGGCATCTCTGCTCTTCGTTCCAATCTTTCCGCCATCGATGTTGTCGAACTTGTGGTGAGGGAATTGGAAACGGATCCACTATTCAATTCGGGTCGTGGATCTGCCCTGACGGAGAAAGGAACGGTGGAAATGGAGGCTAGCATAATGGACGGTCCAAAAAGACGATGTGGTGCTGTTTCTGGCCTAACCACCGTCAAAAATCCTATTTCATTGGCACGTTTGGTCATGGACAAATCTCCTCATTCCTATCTTGCTTTCGATGGCGCTGAAAATTTCGCCAGACAACAGGGTGTGGAGGTTGTGGACAATGAATACTTTATCACCCCGGACAATGTGGGTATGCTTAAGCTGGCAAAGGAAGCAAATACAATCTTGTTTGATTATCGAATCCCAACATCCGGACAAACATGTGGTCAAGGGGTTGAAAGTCCAATGAAAATGAATGGACTTCCAATGAGCATATACGCACCCGAGACAGTTGGGTGCGTAGTTGTTGATCGCGAAGGAAGATGTGCAGCAGCCACATCAACCGGTGGTCTAATGAACAAAATGATTGGTCGTATTGGTGACTCACCTCTCATTGGTGCTGGAACCTACGCGTCTAACATTTGTGGCGTGTCATGCACTGGAGAAGGAGAAGCTATCATACGTGGCACTTTGGCGCGTGAGGTGTCAGCAGTTATGGAATACAAAGGTCTTGGTCTTCAAGAGGCTGTTGATTTCGTCATTAAGCACCGTTTGGATGAAGGATATGCTGGACTCATTGCTGTTTCTAATAAGGGTGAAGTTGCTTATGGATTTAATTGCAATGGCATGTTTAGGGGATGTGCTTCTGAGGATGGTTTCATGGAAGTTGGAATTTGGGAGTAA 978 0.4642 MGGWAIAVHGGAGVDPNLPLERQEEAKQLLTRVLNLGISALRSNLSAIDVVELVVRELETDPLFNSGRGSALTEKGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMDKSPHSYLAFDGAENFARQQGVEVVDNEYFITPDNVGMLKLAKEANTILFDYRIPTSGQTCGQGVESPMKMNGLPMSIYAPETVGCVVVDREGRCAAATSTGGLMNKMIGRIGDSPLIGAGTYASNICGVSCTGEGEAIIRGTLAREVSAVMEYKGLGLQEAVDFVIKHRLDEGYAGLIAVSNKGEVAYGFNCNGMFRGCASEDGFMEVGIWE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00375 325 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 322 IPR029055 -
Trre1g00375 325 FunFam Isoaspartyl peptidase/L-asparaginase 195 325 - -
Trre1g00375 325 CDD Asparaginase_2 5 317 - -
Trre1g00375 325 Gene3D (Glycosyl)asparaginase 195 325 - -
Trre1g00375 325 PANTHER L-ASPARAGINASE 4 311 IPR000246 GO:0016787
Trre1g00375 325 Pfam Asparaginase 4 324 IPR000246 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00375 Trre-Chr1 2681774 2684121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00375 6 285 Miscellaneous Gene Families AT4G00590 26.403 3.82e-18 82.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00375 1 2681774 2684121 Trre1g00375 1 2681774 2684121 ECH
Trre1g00375 1 2681774 2684121 Trre5g04865 5 50500026 50500609 PCT