Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00373 ATGGGCCAAGCAGCTTCCACGGCCACCGTCGCCGCTAACCGCCGGGAAAGCCTACAAGGTAACCGATCTATAAACTCCACAAAAACCACCAGATCTACTGCTTTGGTTTCTCCGATGGTCACCGGTGAAGACGACGATGTTTTAGATCCGGTGGACGGTGACGGTGGCAGTGGAGGTGAAACCTCCGATTATATATCAGATCTACCGGATGAATGCTTAGCTATTGTGTTTCAGTCGCTATGTCCTGCCGATCGGAACCAGTGTTCACTCGTTTGCCGGCGGTGGTTTTACGTTGAAGGACAAAGCCGTCAACGACTTTCGTTGAACGCGAAACTCGATCTGCTTCCGGTAATTCCTTCTCTCTTTGATCGATTCGATTCAGTGACGAAATTAGCGCTTAAATGTGATCGTAGATCTGTTAGTATCAGAGATGAAGCTCTCGTTATAATATCCGAGCGTTGCCCTAATCTCACGCGCCTTAAGCTTCGCGCGTGTCGTGAACTTACCGATGCTGGAATGGAAGCTTTTGCGAAGAATTGTAAAGGTTTGAAGAAATTATCGTGTGGATCTTGTACTTTTGGATCTAAAGGTATGAACGCCGTGCTTGATAATTGTGCTGCACTTGAGGAGCTTTCGGTGAAGCGTCTCCGTGGAATTGCGGAGACTGCTGTTGCTGATCCGATTGGACCTGGCGTAGCCGCGGCGTCACTCAAGACGATTTGTTTGAAAGAGCTTTATAATGGACAGTGTTTTGGTTCGTTGATTCTCGGTGCAAAGAATCTGAAGACTTTGAAGCTTTTTCGATGCTCGGGTGATTGGGATACACTTTTTACGCTAATGGCAGAACGAGTTACGAGCATGATTGTTGAAGTTCACTTTGAGAGGCTTCAGATTAGTGATATTGGATTGCAAGCAATTTCCAATTGTTCGAATTTGGAGATTTTGCATCTTGTTAAGACACCTGAGTGTACTGATATGGGACTTGTTGCAATTGCGGAAAGGTGTAAGTTGTTGAGGAAGCTTCATATTGATGGGTGGAAAGCGAATCGGATTGGTGATGTAGGGTTAATTGCTGTTGCTAAGTTTTGCCCCAATTTACAAGAATTGGTGCTTATTGGTGTTAACCCGACGAAAGCGAGTTTGGAAATGTTGGCATCTAATTGCCCGAATCTAGAGAGGTTGGCTTTGTGTGCAAGTGATACTGTTGGTGATCCTGAGATATCTTGCATTGCTGCAAAGTGTTTGGCTTTGAAGAAACTCTGCATTAAGAGTTGTCCTGTTACTGATCAAGGGATGGAAGCTTTGGCAAATGGGTGTCCCAATTTGGTAAAAGTGAAGGTTAAGAAATGTAAGGGTGTTACCCCTGAGGGTGGTGATTGGTTGAGGCTCACTAGAGGATCGGTTGCTGTTAATTTGGATGCCGTTGAAGCAGAACTTCAAGATGCTAGTGCTAGTGATGGCGGAGCACAAGACAATGGTATAGAATTTCCTCTAATGCCTGGCTTCACTGGGGCATCCACATCGGCAAATCTTGCGTCAAGAACTGTTCGTTCGAGTTCATTCAAGCAAAGGTTAGGGCTTTTGTCCGGAAGGAAAATAGTGGCTAGCACTTTGAGAAGATGGTCAGGTGGTAGCACTAGTGCCCGCCATGGTTAG 1656 0.4583 MGQAASTATVAANRRESLQGNRSINSTKTTRSTALVSPMVTGEDDDVLDPVDGDGGSGGETSDYISDLPDECLAIVFQSLCPADRNQCSLVCRRWFYVEGQSRQRLSLNAKLDLLPVIPSLFDRFDSVTKLALKCDRRSVSIRDEALVIISERCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCAALEELSVKRLRGIAETAVADPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDTLFTLMAERVTSMIVEVHFERLQISDIGLQAISNCSNLEILHLVKTPECTDMGLVAIAERCKLLRKLHIDGWKANRIGDVGLIAVAKFCPNLQELVLIGVNPTKASLEMLASNCPNLERLALCASDTVGDPEISCIAAKCLALKKLCIKSCPVTDQGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRLTRGSVAVNLDAVEAELQDASASDGGAQDNGIEFPLMPGFTGASTSANLASRTVRSSSFKQRLGLLSGRKIVASTLRRWSGGSTSARHG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00373 551 MobiDBLite consensus disorder prediction 1 37 - -
Trre1g00373 551 Pfam Leucine Rich repeat 154 177 IPR001611 GO:0005515
Trre1g00373 551 Pfam Leucine Rich repeat 417 436 IPR001611 GO:0005515
Trre1g00373 551 SUPERFAMILY F-box domain 56 98 IPR036047 GO:0005515
Trre1g00373 551 Gene3D Ribonuclease Inhibitor 102 470 IPR032675 -
Trre1g00373 551 SMART LRR_CC_2 414 438 IPR006553 -
Trre1g00373 551 SMART LRR_CC_2 309 334 IPR006553 -
Trre1g00373 551 SMART LRR_CC_2 180 204 IPR006553 -
Trre1g00373 551 SMART LRR_CC_2 154 179 IPR006553 -
Trre1g00373 551 SMART LRR_CC_2 335 362 IPR006553 -
Trre1g00373 551 SMART LRR_CC_2 363 387 IPR006553 -
Trre1g00373 551 SMART LRR_CC_2 439 466 IPR006553 -
Trre1g00373 551 SMART LRR_CC_2 388 413 IPR006553 -
Trre1g00373 551 FunFam F-box protein SKIP2 100 482 - -
Trre1g00373 551 CDD F-box_AtTIR1-like 65 103 - -
Trre1g00373 551 Gene3D - 64 101 - -
Trre1g00373 551 SUPERFAMILY RNI-like 115 463 - -
Trre1g00373 551 Pfam F-box domain 65 95 IPR001810 GO:0005515
Trre1g00373 551 ProSiteProfiles F-box domain profile. 62 95 IPR001810 GO:0005515
Trre1g00373 551 PANTHER UNCHARACTERIZED 66 473 - -
Trre1g00373 551 MobiDBLite consensus disorder prediction 1 60 - -
Trre1g00373 551 FunFam F-box/LRR-repeat protein 4 65 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00373 Trre-Chr1 2649603 2651258 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00373 1 2649603 2651258 Trre1g00373 1 2649603 2651258 ECH