Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00357 ATGAAAGAAGATAGGGAATATTGTTGTTCGATGAATTCAAGAACAAATAATATCTCTATAGATAACAATAAGGAGATGAGAAAAGAGAAAAAAGCTATGAAACCATATAGAGGAATTAGGATGAGAAAGTGGGGTAAATGGGTTGCAGAAATTAGAGAACCAAACAAAAGATCAAGAATTTGGTTAGGTTCTTACATAACTCCTATTGCTGCCGCACGTGCCTATGACACAGCTGTGTTTTATCTTAGAGGTCCTTCTGCTCACCTTAATTTCCCCGAATTATTGTTCAAAGATCAAGAACAAGATGATGATGGTGAACAAAATCAACAACTTGGGAACATGTCTGCTGATTCAATAAGGAAAAAAGCTACTCAAGTTGGTGCTAGAGTTGATGCTCTTGAAATTCATGCTTCTTCAAATAATCATGTTCATGACTCCTCCAATTCTTCTTCTTCTTCTACTACTACTAATTCTCTCAAACCTGACTTGAATGAGTTTCCAAATCCTGAAGATTATTGA 519 0.3545 MKEDREYCCSMNSRTNNISIDNNKEMRKEKKAMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSAHLNFPELLFKDQEQDDDGEQNQQLGNMSADSIRKKATQVGARVDALEIHASSNNHVHDSSNSSSSSTTTNSLKPDLNEFPNPEDY 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00357 172 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Trre1g00357 172 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Trre1g00357 172 MobiDBLite consensus disorder prediction 130 172 - -
Trre1g00357 172 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Trre1g00357 172 MobiDBLite consensus disorder prediction 139 163 - -
Trre1g00357 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 171 - -
Trre1g00357 172 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
Trre1g00357 172 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Trre1g00357 172 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Trre1g00357 172 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Trre1g00357 172 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Trre1g00357 172 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00357 Trre-Chr1 2518031 2518549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00357 30 171 AP2-EREBP Transcription Factor Family AT2G23340 56.463 5.12e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre1g00357 AP2 4.1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00357 1 2518031 2518549 Trre1g00357 1 2518031 2518549 ECH