Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00354 ATGAAGGTGCATCAATTCACACGTGGATTTTGGGAGCATGAACCTATCCTCACTCTTGGTTGCAAACGTTTACGCCCCCTTGCTCCTAAATTTTCTAATAACACCGATAATTCTACTAATCACACCCCTTCTCTTTCTTTTGATCTCAAGAGTTTCATTAAACCTGAAAGTACTTCCAGAATTAATAATCTTTCTTCCTCTGATCATGATAATAACAAGAAAGATCCACCTTCACCACAAAGCCAGGTTGAAACGCATATTCCAGGAGGGACAAGGTGGAATCCAACACAAGAACAAATAGGAATCTTAGAGATGTTATACAGAGGTGGAATGAGAACACCAAATGCACAACAAATAGAACAGATCACTGTTCAACTTAGCAAGTACGGTAAAATTGAAGGGAAAAATGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGTCTTGTTCATAGTCCTCGTACTCCCACCACCACACTAGTGTCATCCACGTTTAGTACCATTACAACTTTGGACACCCCCAAAAAGGAAGAATTAATGGAAAGAGATCAACGAGATAGTCCATTGAAGAAGAGTAGGAGTTGGCCATTTGAGTACTTGGAAGATAAAAATTGGTCAATTTGCAAACAAGAGGAACATAAAACTCTAGAGCTTTTCCCATTACACCCGGAAGGCAGATGA 711 0.3994 MKVHQFTRGFWEHEPILTLGCKRLRPLAPKFSNNTDNSTNHTPSLSFDLKSFIKPESTSRINNLSSSDHDNNKKDPPSPQSQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLVHSPRTPTTTLVSSTFSTITTLDTPKKEELMERDQRDSPLKKSRSWPFEYLEDKNWSICKQEEHKTLELFPLHPEGR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00354 236 CDD homeodomain 91 152 IPR001356 GO:0003677
Trre1g00354 236 Pfam Homeodomain 91 150 IPR001356 GO:0003677
Trre1g00354 236 SMART HOX_1 88 155 IPR001356 GO:0003677
Trre1g00354 236 MobiDBLite consensus disorder prediction 59 95 - -
Trre1g00354 236 SUPERFAMILY Homeodomain-like 90 157 IPR009057 -
Trre1g00354 236 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 236 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Trre1g00354 236 ProSiteProfiles 'Homeobox' domain profile. 96 151 IPR001356 GO:0003677
Trre1g00354 236 Gene3D - 90 157 - -
Trre1g00354 236 MobiDBLite consensus disorder prediction 76 95 - -
Trre1g00354 236 FunFam WUSCHEL-related homeobox 4 90 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00354 Trre-Chr1 2495894 2497563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00354 1 171 Wox Gene Family AT1G46480 60.556 1.02e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre1g00354 Homeodomain 1.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00354 1 2495894 2497563 Trre1g00354 1 2495894 2497563 ECH