Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00349 ATGCAAGGGCAGAGAGGCGCAATTGGTTCCTCCTCTGAAACCTTCGAGTTCGATTGTGGATCTACATCAAGTACTGCTGCAGTTGATCAGCACATTTTTTGGAATAATATGCGCACTCCGGCTGAAAATCGGATACCTGAATTTATGCTTCCTCCCAGTGATATGAACCAATCTCATGGGAATTCTGTAAACCATGAATGGCAGAACTTGAGCGGATGGAGCTTAGGCGAGCCAAGTTCTAGTAATACACAGAACGAAGCTAACAACACTGAGCTGAAAAGGGAGTTAGGATTATCACCTCCGATAAATGGTGATATAGCTGGTCCAAGACTAGAAGAAAGGCACTTCGAACCAACAAATGCATTTTCATTGGATAATGTCAATACAGGTCCTATGTATATGTGCAGCTCCAATTCTCATTTGGTGCCTCAAAATCTCAACTTAAATGCTGCTTTAGCTGATAATGTTGGTGATAATAATAACTATCATGTGGAAGTTGATCATCCTAACGTGATCAAATCTAGTGGTCCGCTGAATGAGCATCTTCCACCTCCGATTAGTTCTGGTTCATTTTTGCTTCCTTCTGCAAGTAATAGCATTTTTGTTGGGGATACCGATGGTAGGCCAGGTTGTTCTCTAGACACCCGCCGCGTGTCTTGTAAAAGAAAGGCAGTTGAAGGAAATGGTGGACAATCTTCTAACGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGAAGTGCTTGGAATACTCTTCCTACTCAGGATTATGCAGGGAGCAGTTTTAACAGATCAGCACCGGCAGAACAGGTTACTGCAAGACTTGGCCTTGCTATCGGGGGAGGATCTTCTGAAACCATACCTGAGTCAACTGTTGCCCCAGAAAGCTTCCACAGAAATTTTCGTTTGAGGCTAAACCCTTCAAGCCAGCAAATTTCTCTCCCTCAACCCACATTCTCAAACGGGAGTGTAATCAGGAATTCCAGTGTTCCTTCGTCTTCTCCAATATTGCAAAGGTTCAACCCCATCGATAATCCTGTGGACTTGAGGGCAGCACAACCGGTAGATCTCATGCTTCCTCAAAGCCAGCCACTTCTTATTCATGTTCCTTCTTTACCAAGGAGTGCGCAATCAGTTAGGTGGAGCGGTGGTTCTAGCTCAACAAACAACCTTTCGTCAAATTCAGTTTTAGGCGTAGATAGGGATAATCAACCACATGAGGGAGCAAGCTCAAGAACTATGGCTAGAAACATTTTAGATCACCCGGTTTTTGTACCTGCAAATGTACGAAATGCAGCTCGAAATCCAACAAGACCTTCGAGCAGTGCAAATTTAAGTATTCCAGGAAATGTTGCTTCGTCATCACGGACTGCTCCAAATCCTCCCGCTTTGAATCCATCATCTCTCTCGGCGTGGGTATCTCGTCCTAATCCACAGCAGTATCCACGCAGGTTATCTGAATTTGTTCGTCGGTCCTTGTTTTCTCCTGGTTCTGAAGGTGGAAGTTCAAGCACCAGCTATTCTTCCTTGCGCGCTCCTTCTGCTTCGTCAGAATCAAGAGGACCGCCGTCTGGGACGAACCCTGGATCATCTCCATGGCTGGAGAGGTCAGCTGAGAGTGAATTTGGAGTTCCCTATACCTTAAGATCTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGGAACGTGTTGGGCATGATGCGTAGGGGTGGCAACTTGCGGTTTGAGGATGTTATGATTCTCGACCATTCAATGTTTTCTGGGCTTGCTGATATGCACGACCGACACAGGGATATGCGGCTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAACGTATCGGAAATGTGAGTACAGGATTGAATGAGGAGACCATTATGAAACATTTGAAACTGAAGAAATATTCAGTTGATGAATCAGGTTCTCAGAATGAAGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAAAAATGAAGATGATATCGGATCGTTGGATTGCGGGCACGATTACCATACCGACTGTATTAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACATGA 2118 0.449 MQGQRGAIGSSSETFEFDCGSTSSTAAVDQHIFWNNMRTPAENRIPEFMLPPSDMNQSHGNSVNHEWQNLSGWSLGEPSSSNTQNEANNTELKRELGLSPPINGDIAGPRLEERHFEPTNAFSLDNVNTGPMYMCSSNSHLVPQNLNLNAALADNVGDNNNYHVEVDHPNVIKSSGPLNEHLPPPISSGSFLLPSASNSIFVGDTDGRPGCSLDTRRVSCKRKAVEGNGGQSSNGGSSSYSQHTDGSAWNTLPTQDYAGSSFNRSAPAEQVTARLGLAIGGGSSETIPESTVAPESFHRNFRLRLNPSSQQISLPQPTFSNGSVIRNSSVPSSSPILQRFNPIDNPVDLRAAQPVDLMLPQSQPLLIHVPSLPRSAQSVRWSGGSSSTNNLSSNSVLGVDRDNQPHEGASSRTMARNILDHPVFVPANVRNAARNPTRPSSSANLSIPGNVASSSRTAPNPPALNPSSLSAWVSRPNPQQYPRRLSEFVRRSLFSPGSEGGSSSTSYSSLRAPSASSESRGPPSGTNPGSSPWLERSAESEFGVPYTLRSLAAGGEGSSRLVSELRNVLGMMRRGGNLRFEDVMILDHSMFSGLADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMKHLKLKKYSVDESGSQNEAEPCCVCQEEYKNEDDIGSLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAT 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00349 705 SMART ring_2 658 698 IPR001841 -
Trre1g00349 705 SUPERFAMILY RING/U-box 657 701 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 226 252 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 223 252 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 494 536 - -
Trre1g00349 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 216 703 IPR045191 GO:0061630
Trre1g00349 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 702 IPR013083 -
Trre1g00349 705 ProSiteProfiles Zinc finger RING-type profile. 658 699 IPR001841 -
Trre1g00349 705 MobiDBLite consensus disorder prediction 433 477 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 377 416 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 432 477 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 54 92 - -
Trre1g00349 705 Pfam Ring finger domain 658 699 IPR001841 -
Trre1g00349 705 MobiDBLite consensus disorder prediction 496 534 - -
Trre1g00349 705 FunFam E3 ubiquitin-protein ligase MBR2 625 703 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 377 400 - -
Trre1g00349 705 MobiDBLite consensus disorder prediction 53 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00349 Trre-Chr1 2469605 2473772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00349 1 705 C3H Transcription Factor Family AT2G15530 32.850 3.52e-74 251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00349 1 2469605 2473772 Trre1g00349 1 2469605 2473772 ECH