Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00348 ATGGATCCTTCTTCTTCTTCCTCATCTTTCAATTTCTCTGATCCCTTTCCTAATCCTTCCACAACCATCCCTTACCCTTCTTCTCACTTCACTTCTTCTTCAGCTCAGAATGATGAAGCTTCAGAATTGCCATCATCAAAGGCTACCCCACCACCACGTTCTTCTTCAAAGAGGAGCAGAGCTGCAGAGTTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTAAAAGCCTTGCAAAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCTATAGAATATTTAAAGCAACTTCAGCTTCAAGTACAAATGTTAATGGTGAGAAATGGTTATAGCCTGCATCCAATGTCTTTATCAGGAGGACCGCGGCCCACGATGTTTTCTCAGACCGAGTTGTTGAATCTTGATGAGGGTAATATTGGATTTCACAATTCTATCAATACAAACAATGAATGTTTCGCGCGGTCCGGTTTTAGTTTTCCAGAACAATGCAGCATCTCAAATCAATCTGTTATTTTACCGTCGACAACAAATATACCTAATTTTGATGCCTCATCAAGTTTTCAACCCTCTATTAAGGATGTTTTCTGCAACAACATGCCACAACTGATTTTGGATTCGACAAGGATTGGAAAAACTCCTTCTCCAGATGTGTCTTAA 693 0.3882 MDPSSSSSSFNFSDPFPNPSTTIPYPSSHFTSSSAQNDEASELPSSKATPPPRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMVRNGYSLHPMSLSGGPRPTMFSQTELLNLDEGNIGFHNSINTNNECFARSGFSFPEQCSISNQSVILPSTTNIPNFDASSSFQPSIKDVFCNNMPQLILDSTRIGKTPSPDVS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00348 230 MobiDBLite consensus disorder prediction 1 74 - -
Trre1g00348 230 FunFam Basic helix-loop-helix transcription factor 55 118 - -
Trre1g00348 230 SMART finulus 66 115 IPR011598 GO:0046983
Trre1g00348 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Trre1g00348 230 CDD bHLH_AtPIF_like 60 122 IPR047265 -
Trre1g00348 230 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 31 205 IPR031066 -
Trre1g00348 230 Gene3D - 55 119 IPR036638 GO:0046983
Trre1g00348 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 120 IPR036638 GO:0046983
Trre1g00348 230 MobiDBLite consensus disorder prediction 58 74 - -
Trre1g00348 230 Pfam Helix-loop-helix DNA-binding domain 64 110 IPR011598 GO:0046983
Trre1g00348 230 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00348 Trre-Chr1 2460542 2462678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00348 60 131 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 84.722 7.20e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g00348 HLH 9.6e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00348 1 2460542 2462678 Trre1g00348 1 2460542 2462678 ECH