Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00346 ATGGCTTTCCTTCAAGATCAGTATCAACAACGTCACTATCAACAACAACAATCTCAACCACAAACCAAATCTTTCAGAAATTTACGAACAATTGATGGTCAGATGTCGCAGCAGATGGCTTTTTACAACCCTACTGATTTGCAAGATCAGTCTCAGCATCCACCTTACATTCCTCCATTTCATGTTGTTGGTTTTGCTCCGGGTCCTGTAATTCCTGCTGATGGAAGTGAAGGTGGTGTTGATTTGCATTGGAATTTTGGTTTGGAACCGGAGAGGAAGAGACTAAAAGAACAGGATTTTTTGGAGAATAATTCTCAGATATCTTCTGTGGATTTCCTGCAACCTCGATCTGTGTCCACGGGGTTGGGCTTGTCGCTTGATAATACTCGCTTGACTTCAACTGGAGACTCGGCTTTGCTGTCACTTATAGGGGACGACATTGATCGTGAGCTGCAGCAGCAGGATTTAGAGATGGATAGATTTCTCAAACTGCAGGGTGAACAATTGCGGCAAACAATCTTAGAGAAAGTTCAGGCAACACAACTTCAGAGTGTTTCGATCATTGAAGACAAGGTCCTCCAAAAACTTCGTGAGAAAGAAACCGAGGTGGAAAACATCAACAAGAGGAATATGGAACTCGAAGATCAAATGGAGCAGTTGAGCGTAGAAGCAGGCGCATGGCAACAGCGAGCCAGATACAACGAAAACATGATTGCTGCTCTCAAGTTTAATCTCCAACAAGCATACCTTCAAACTAGAGATAGTAAAGAAGGATGTGGTGACAGCGAGGTAGATGATACAGCTTCTTGCTGTAATGGTCGTTCGCTTGATTTTCATCTGCTCTCCAACGAAAATTCCAATATGCAAGACATGATGAAATGCAAGGCTTGCAGAGTCAATGAAGTGACCATGGTTTTATTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGCGAAAGTAAGCTTAGTTTTTGTCCTCTATGTCAATCCTCTAAATTCATCGGCATGGAGGTCTACATGTAA 1023 0.4242 MAFLQDQYQQRHYQQQQSQPQTKSFRNLRTIDGQMSQQMAFYNPTDLQDQSQHPPYIPPFHVVGFAPGPVIPADGSEGGVDLHWNFGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLTSTGDSALLSLIGDDIDRELQQQDLEMDRFLKLQGEQLRQTILEKVQATQLQSVSIIEDKVLQKLREKETEVENINKRNMELEDQMEQLSVEAGAWQQRARYNENMIAALKFNLQQAYLQTRDSKEGCGDSEVDDTASCCNGRSLDFHLLSNENSNMQDMMKCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00346 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 90 338 IPR017066 -
Trre1g00346 340 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
Trre1g00346 340 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 276 340 - -
Trre1g00346 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 340 IPR013083 -
Trre1g00346 340 CDD mRING-HC-C3HC5_CGRF1-like 294 328 - -
Trre1g00346 340 Coils Coil 189 230 - -
Trre1g00346 340 PIRSF SBP1_RNase_bind 4 340 IPR017066 -
Trre1g00346 340 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g00346 340 Pfam Zinc finger, C3HC4 type (RING finger) 292 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00346 Trre-Chr1 2451668 2453865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00346 294 330 Miscellaneous Gene Families AT4G39050 45.946 2.97e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00346 1 2451668 2453865 Trre1g00346 1 2451668 2453865 ECH