Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00330 ATGGAGGAAGTTGATAACAAACCAACCTCCTCAAGAAATGTTGAAGCAAATTCGCTAGCAGAAACTACTCAAGAAAATACTGATATCATAATAACTCCAACAATCAATCACTCTTCCAATGAAGCTTCCATCAACTCTTCTGATGATAACAATATCGTGGAACATGAAACTCATTTTCGAGCGAATAATTTATCAGAAATAGAATCAAAGTCAACAAATGCTTCGGATGATCAATCTATAAGACAAGAAGATGAACATCCTCTCAATGATCATGCAACTCCAAAAGAAAAATTTCAAGAACAAGATGAGTATCTTCCAATAGTGGCAGATTCTGAACCTGAAGCTTTAGAAGATACATTTAACAGAACACAAGATGGTGGTTCAACTGTTGCTGCTAGCAGTGGCGATGTTGATGATGATAATCATATGGAACTCTCAACATCCTCTTCTGTAACAGAAGAGTTGCAGATTGACCCTAAAGATTCACCTCGAACCGAAGAAAATTTAGCTTCAACCTCAAATGCTGAAGTTCATGTAACAGAACAAAGTCATCAGGAACCTATGGTTGCAGATTCTGAACAAAAAGATGCCGGTTCAAGTGTTACTGCTAGCGGAAATGTTGACATTGATAATCTTATGGAACTCTCACCATCCTCTTCTGAAACAAAAGAGTTGCAGATTGATCCTAAAGATTCACCTCGGACTGTACTTATCGATGCTGCTCACGAAAATTTAGCTTCATCGCCCAATGCGGAAGTTCATGTAACAGAACAAATTCAACAGGAACCTGTGGTTGAAGATTCTGAAGAAGGATCTTTAGTAGATACAGTGAACATGCAGAAAGATGGTGCTGATCAGATGGAACTATCAGCTTCGGATTCTGAAACAAAAGAGTTGCAGAATGATCTCAAAGAACTAAATGTTATTGTGTCTACAATCAAGGGTTCTGATATTTCTGCTGGCGCTGTTGAATCGCCTACAACTGCTAAGCAACTTGCTGAAAAAAGAGGCATAATTGATACAGCATCTCCATTTGAATCTGTTAAAGAAGCTGTTTCTAAGTTCGGAGGAATCGTAGATTGGAAGGCTCATAGAATGATCACCGTCGAGAGACGCAAGCATGTAGAACAAGAGCTTGAAAAAGCGCAAGATGAGATTCCGGGATACAGAAAAAGATCAGAGGTGGCTGAACATGAAAAAGTCCAAGCACTTCAGGAGCTTGACAGCACAAAAAGACTAATAGAAGAACTGAAACTGAACCTAGAGAGGGCAAAAACCGAAGAGCGTCAAGCAAAGCAAGACTCAGAACTTGCAAAGCTAAGAGTGGAAGAGATGGAGCAAGGTATTGCCGAAGATTCTAGCGTGGCAGCCAAGGCTCAGCTCGAGGTTGCTAAAGCAAGGTATACATCTGCAATTACCGAGTTAACATCGGTGAAAGAGGAGTTAGATGCGTTGCGTGTGGAATATGCTTCCTTAGTTGATGAAAAAGGCGAAGCTATAAACAAAGCTGAAGTAGCTGTTGCTGCATCAAAACAAGTAGAAAAGGCGGTGGAAGATTTGACTATTGAGTTAATTGCCACCAAGGAGTCTTTGGAAACGGCACATTCTGCACATATGGAAGCAGAAGAACACAGAATAGGAACCGTCATGGCAAGAGATCAAGATTTTCTAAATTGGGAGAAGGAACTTAAACAAGAAGAACAAGAACTAGAAAAACTCAACCAGAAAATTTTGTTTGCTAAGGATCTTAAATTTAAACTTAGGAAATCCTTTACATTGTTGCTTAATTTGAAAGCCGAATTACATGCCTATATGGAATCAAAGTCGCACCAAGTAGGCGATGAAGGAAACGAGAAACAAGAGAAAAAATCACACAATGAAATACAAGAAGCAATTGCATCAGCCAGAAAAGAACTTGAGGAAATAAAGGTTAACATAGAGAAAGCCACTTCTGAGGTAAGTTACTTAAAGGTGGCTGCAACATCATTAAGATCAGAACTCGAACAAGAGAAATCATCGCTCACCTCAATTAGGCAAAGAGAGGGAATGGCCTCAGTTACAGTTGCATCTATTGAAGCCGAGCTGAAGAAAATTAAATCGGAAATCACTTTTGTTCATACAAAGGAAAAAGAAGGCAAGGAGACTATCCTTGAGCTTCCAAAGAAACTAAAAGAAGCGGGCGAAGAGGCTAATAAGGCCAACTTGGTTGCTCAAGAAGCTCGCGAAGTGCTTCGGAGAGTAAAGGAGGAAGCAGAACGAGCCAAGGCCGGTGCAATTACAATGAATAGTAGATTACTTGCAGCTCAAAAGGAGATAGAAGCTGCAAGAGCTTCTGAAAGGTTGGCAATACAAGCGATTAAAGCATTGCAAGAGAGCGAATCGGCTAGAAGCAACAACAATGAAGTGGATCCATCGAATGGTGTGATACTTTCGGTTGAGGAGTACTATCATCTTACGAAACAAGCTCATGATGCAGAAGAAAAGGCCAATGTGAGAGTTGCGACCGCGAATTCTGAGATTGATGTAGCTAAGGAGACTGAATTGAAAACATTGGAGAAGTCGAATGAAGTGAACAAAGAAATGGCTGCTAAAAGAGAATCTTTGAAGATTGCAATGGAAAAAGCTGAGAAGGCAAGGGAAGGAAAATTAGGTGCAGAACAAGAATTAAGAAAGTGGAGAGCCGAACATGGACAACGCAGAAAAGAGGGCGAAGTAGGCCAAAGAGTGGTAAACCAGAACACAAGTCATAGCGGTAAACTTAATCAAAATCATAGTGCAACTATTCCTGTAAATTACTTTTCAAGTCCAAAATCCTATGCTCATGCAAACAATGAAAATGGATCGCCACTGGATGCGAAAAGTGGAAAAAAGAAGAAAAAGTCGTTTTTTCCACGGCTTCTTATGTTCTTTGGAAGAAGAAAAGCACATTCAACTCATTCAGGGTAA 2946 0.4002 MEEVDNKPTSSRNVEANSLAETTQENTDIIITPTINHSSNEASINSSDDNNIVEHETHFRANNLSEIESKSTNASDDQSIRQEDEHPLNDHATPKEKFQEQDEYLPIVADSEPEALEDTFNRTQDGGSTVAASSGDVDDDNHMELSTSSSVTEELQIDPKDSPRTEENLASTSNAEVHVTEQSHQEPMVADSEQKDAGSSVTASGNVDIDNLMELSPSSSETKELQIDPKDSPRTVLIDAAHENLASSPNAEVHVTEQIQQEPVVEDSEEGSLVDTVNMQKDGADQMELSASDSETKELQNDLKELNVIVSTIKGSDISAGAVESPTTAKQLAEKRGIIDTASPFESVKEAVSKFGGIVDWKAHRMITVERRKHVEQELEKAQDEIPGYRKRSEVAEHEKVQALQELDSTKRLIEELKLNLERAKTEERQAKQDSELAKLRVEEMEQGIAEDSSVAAKAQLEVAKARYTSAITELTSVKEELDALRVEYASLVDEKGEAINKAEVAVAASKQVEKAVEDLTIELIATKESLETAHSAHMEAEEHRIGTVMARDQDFLNWEKELKQEEQELEKLNQKILFAKDLKFKLRKSFTLLLNLKAELHAYMESKSHQVGDEGNEKQEKKSHNEIQEAIASARKELEEIKVNIEKATSEVSYLKVAATSLRSELEQEKSSLTSIRQREGMASVTVASIEAELKKIKSEITFVHTKEKEGKETILELPKKLKEAGEEANKANLVAQEAREVLRRVKEEAERAKAGAITMNSRLLAAQKEIEAARASERLAIQAIKALQESESARSNNNEVDPSNGVILSVEEYYHLTKQAHDAEEKANVRVATANSEIDVAKETELKTLEKSNEVNKEMAAKRESLKIAMEKAEKAREGKLGAEQELRKWRAEHGQRRKEGEVGQRVVNQNTSHSGKLNQNHSATIPVNYFSSPKSYAHANNENGSPLDAKSGKKKKKSFFPRLLMFFGRRKAHSTHSG 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00330 981 Coils Coil 475 495 - -
Trre1g00330 981 Coils Coil 365 443 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 77 103 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 166 187 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 608 627 - -
Trre1g00330 981 Coils Coil 556 583 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 121 135 - -
Trre1g00330 981 Coils Coil 723 757 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 932 950 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 195 223 - -
Trre1g00330 981 Pfam Weak chloroplast movement under blue light 336 899 IPR008545 -
Trre1g00330 981 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 337 972 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 10 50 - -
Trre1g00330 981 Coils Coil 625 652 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 932 958 - -
Trre1g00330 981 Coils Coil 858 895 - -
Trre1g00330 981 MobiDBLite consensus disorder prediction 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00330 Trre-Chr1 2322933 2326317 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00330 1 2322933 2326317 Trre1g00330 1 2322933 2326317 ECH
Trre1g00330 1 2322933 2326317 Trre5g04828 5 50074332 50078297 PCT