Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00328 ATGGAAATTTCAAATATTCATAAGTTGGTGAAGATAGCACCATCCAAAGCTTTGGTTGTCAGATTCAATTTGTTCTGCCTTGCCATCTTTCTTGTTGTTTATGCAACTCTTCTTCTTCGTCCGTCTTCTTCGGTCTATTTCGATAATGCAGCCTCGCTTGTTAGATGCTCCTTGAGAGAATGTCATCATAAGGGAGATAAAAGTATAAAAATGAAAGCCGTATTAGAGGAATTACCTAAACAAAAATCATGGAACCCAAAGAAGAATGGACCAAAGATAGAAGTACCAAGTTTTTTACGCGAAAAAATCGGTAAAGGAATGAAAATTGGAATGGTAAACATGAATGAAGATGACGACGTAAGCGAATGGAACATACATGGCGAAACAATACCAATTAATTTCGACAAAGTAACACAATTTTTCAACTGGACAGATTTATTTCCAGAATGGATCGACGAAGAAGAAGAAAGCGACGTCCCAACATGTCCCGAATTACCAATGCCCGAATTCACAAGATATGAAAAAATGGATTTAATAGTTGCAAAGTTACCATGCAAGTATCCACTAGAAGGGTGGGGGAGAGAAGTTTTAAGATTACAAGTTCATCTTATTGTGGCAAACATGATTGTGAAGAAAGGGAAAAAAGATTGGAAATTGAAGAGTAAGGTTGTGTTTTGGAGTAAGTGTAGACCAATGTTAGAGATTTTTAGATGTGATGACTTGGTTAAACATGAAGGTGATTGGTGGTTTTTTGAAATTGATGTAAAGAGATTAGAACAAAAGATTTCTTTGCCCGTTGGTTCATGTAATTTGGCTTTGCCTCTATGGGAACAAGGCACAGACAAAGTATACGACATAACCAAAATGGAACAAAACGTAAGAAACAAAAAAAGAGCAAAACGTGAAGCATATGCAACAGTACTACATTCCTCAGAAAGCTACGTTTGTGGAGCAATAACGTTAGCACAAAGCCTTCTAAAAACCGGAACCAAACGCGACCTTATACTTCTCATCGACAATTCAATCTCCGTCCACAAACGCCGCGCATTGGCTGCTGCCGGTTGGAAGACTCGGACCATCACTCGAATTAGAAACCCGAGAGCGGAGAATGGAACTTACAATGAGTATAATTATAGTAAGTTTAGGTTGTGGCAACTTACTGATTATGAGAAGATTATCTTTATAGATTCCGACATTGTTGTACTTCGGAATCTTGATATTCTCTTCAATTTTCCTCAAATGTCTGCCACTGGGAATGATCAATCCATTTTCAACTCTGGCATTATGGTTATTGAGCCCTCCAATTGCACCTTCAGTGTACTCATGAGCCGGCGCCACGACATAGTTTCATATAATGGAGGTGATCAAGGATTTCTAAATGAGATATTTGTATGGTGGCATAGACTTCCAAGAAGAGTAAACTATTTAAAGAATTTTTGGGCCAACACAACAATTGAAGCAAGTGTGAAAAATGGATTATTTGGTGCTGACCCTCCAAAACTATATGCAATTCATTATCTTGGTTTGAAACCTTGGCATTGTTATAGAGACTATGATTGCAATTGGGATGTTGTAGATCAAAGGGTTTATGCTAGTGATGTAGCACACCAACGTTGGTGGAATTTTCATGATGGTATGGACAAAAAGTTACAAGGTTTTTGTAGGTTGACAAGACAACGTAGGACTGAGTTGAATTGGGAAAGGAGAAGATCTAGTAAGATGGGATCACTTGATCATCATTGGAAGATTAATGTTACTGATCCTAGAAAATCAGGATCTCTTTTGATGGATTAG 1794 0.3779 MEISNIHKLVKIAPSKALVVRFNLFCLAIFLVVYATLLLRPSSSVYFDNAASLVRCSLRECHHKGDKSIKMKAVLEELPKQKSWNPKKNGPKIEVPSFLREKIGKGMKIGMVNMNEDDDVSEWNIHGETIPINFDKVTQFFNWTDLFPEWIDEEEESDVPTCPELPMPEFTRYEKMDLIVAKLPCKYPLEGWGREVLRLQVHLIVANMIVKKGKKDWKLKSKVVFWSKCRPMLEIFRCDDLVKHEGDWWFFEIDVKRLEQKISLPVGSCNLALPLWEQGTDKVYDITKMEQNVRNKKRAKREAYATVLHSSESYVCGAITLAQSLLKTGTKRDLILLIDNSISVHKRRALAAAGWKTRTITRIRNPRAENGTYNEYNYSKFRLWQLTDYEKIIFIDSDIVVLRNLDILFNFPQMSATGNDQSIFNSGIMVIEPSNCTFSVLMSRRHDIVSYNGGDQGFLNEIFVWWHRLPRRVNYLKNFWANTTIEASVKNGLFGADPPKLYAIHYLGLKPWHCYRDYDCNWDVVDQRVYASDVAHQRWWNFHDGMDKKLQGFCRLTRQRRTELNWERRRSSKMGSLDHHWKINVTDPRKSGSLLMD 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00328 597 CDD GT8_Glycogenin 302 546 - -
Trre1g00328 597 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 300 549 IPR029044 -
Trre1g00328 597 FunFam Hexosyltransferase 299 550 - -
Trre1g00328 597 PANTHER GLYCOGENIN SUBFAMILY MEMBER 194 590 - -
Trre1g00328 597 SUPERFAMILY Nucleotide-diphospho-sugar transferases 302 551 IPR029044 -
Trre1g00328 597 Pfam Glycosyl transferase family 8 307 513 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00328 Trre-Chr1 2308772 2312513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00328 75 596 Glycosyltransferase AT4G33330 68.173 0.0 754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00328 1 2308772 2312513 Trre1g00328 1 2308772 2312513 ECH