Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00320 ATGCCTGTGTATGTCCCTTTTGACAAACCAAAAACGGTGTCTATGGAACAAGTCAACTTGGAAAGGAAAATTAGAGAAAGATTAGATAAAGCAGATATCAATAACAACGGTTGTTACTCAAAGGAAGAACTCACAAAAGCTCTAAAGGATTTAGGTGCCTATTTTCCTGGATTGAGAGCTATACGTTGTTTGAAGAAACTTGATGCTAACAAAGATGGACAAATCAGTGGTGAGGAAATTGACACTTTAGTTGATTATCTTCTTACTCGTGGTTTTGGCAAAAACTAA 288 0.3611 MPVYVPFDKPKTVSMEQVNLERKIRERLDKADINNNGCYSKEELTKALKDLGAYFPGLRAIRCLKKLDANKDGQISGEEIDTLVDYLLTRGFGKN 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00320 95 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Trre1g00320 95 ProSiteProfiles EF-hand calcium-binding domain profile. 55 90 IPR002048 GO:0005509
Trre1g00320 95 ProSiteProfiles EF-hand calcium-binding domain profile. 19 54 IPR002048 GO:0005509
Trre1g00320 95 Pfam EF hand 64 84 IPR002048 GO:0005509
Trre1g00320 95 SUPERFAMILY EF-hand 19 81 IPR011992 -
Trre1g00320 95 Gene3D - 7 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00320 Trre-Chr1 2274211 2274498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00320 6 83 EF-hand Containing Proteins AT3G59440 35.897 3.17e-06 41.6