Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00313 ATGCAAGCTTGGGGGAGGTTAGGAGGTTACATAAGACGCGGTGTGTGTAGTGTTTCCGGGCCATTTCTTCCGTTTGGTGGCGCGGTTGATATAATTGTTGTTCAGCAGAAAGATGGGAGCTTTAAATCATCTCCTTGGTATGTTAGATTTGGGAAATTCCATAGGGTTATGAAAGCGGCGAAAAGGGAAAAGGTTAAGGTTAGTGTTAGTGTTAATGGGGTTGAAACTGATTTTCATATGTGTTTGAATCCTAAAGGGGAAGCTTTTTTTCTTCATGCAAATTCACAACATGGGGAAGGAGGAGAAGAACAAGAGGAAGAATTACTCGAACAAGAAGAAGATGGAACAGAATTGTGGTCTTATGATGATATACAGCTGAGAGGTACTACTACTACTACTAAGAGGATCAGGTCGAAAAGTTGCAATTATAATAATTCGGAAAGGTTAAGTTCTGAGGATAAGGTTTTAGCTGGGACTGGTTCTCGTGGTTCGAGAATATATAGGTTTGTATTTGGGCCAAGTTCTAATGGTGGTGGTGAAGATGTTGATGGAGATTTAGTGGAGCGTGCTGAGATTGCAGCCAAGTTGTTGGAGTTAAGATGGTCTACGAATCTCACTTTTGATGAACTTCCTTATAGGGAAAGAAGGAAATCTCAGGGTGATGAGTTGGACAAAGAGAAAGCCAAGTCTGAATCTAGTAAGATTTTGCGCGCTACGACTCTGCAGCTACCTGAGGGTGGAAAAACGGAGGGAGTGACTATTAAGATGCCGGTGACGGATTGTGGTATTTGTGATGTTGCGGATGCGGGAAACTTAGCAAAGTTTCAAAAATCTCGGACTGTTAATATTGGTCGAAGGGATCGTTCTGTCAAGAAGGTTAGCGTAAATACTCCAACGTCTGAACAACTGTCGTCCTTGAATCTGAAGGAAGGGAGGAACACAATAACCTTCTGTTTCTCTACACCTATGATGGGGAAGCGGCAGATTGATGCTCGAATATTTTTGTGGAAATGGAATACACGGATAGTGATATCAGATGTGGATGGGACAATTACAAGGTCAGATGTTCTAGGTCAGTTCATGCCTTTGGTAGGGATTGACTGGTCACAGATGGGCGTTGCTCATTTATTTTCAGAAATCAAGGAAAATGGCTACCAGATACTTTTCCTCAGTGCTCGTGCGATTTCTCAGGCACATCACACCAGACAATTCCTATTGAACCTTAACCAGGATGGGAAAGTCTTACCAGATGGTCCTGTTGTTATTTCCCCCGACGGACTTTTTCCTTCTCTATATAGAGAAGTTATCCGCAGGGCACCTCACGAGTTCAAAATTGCATGTTTAGAGGACATCAGGGCACTTTTTCCGCCCGATTACAATCCGTTCTATGCTGGTTTTGGAAATAGAGACACCGATGAAATCAGCTACCTTAAGGTTGGAATCGCTAAAGGAAAAATATTCATTATTAATCCCAAGGGTGAGATTTCTGTAAACCGACGTTGTTTAGACACAAAATCATACACTTCTCTTCATGCTCTCGTGCATGGAATGTTCCCCCCGACAGAATCATCTGAGCAGGAGGATTTCAATTCATGGAATTTCTGGAAGTTGCCCACTTTCGAATAA 1626 0.4244 MQAWGRLGGYIRRGVCSVSGPFLPFGGAVDIIVVQQKDGSFKSSPWYVRFGKFHRVMKAAKREKVKVSVSVNGVETDFHMCLNPKGEAFFLHANSQHGEGGEEQEEELLEQEEDGTELWSYDDIQLRGTTTTTKRIRSKSCNYNNSERLSSEDKVLAGTGSRGSRIYRFVFGPSSNGGGEDVDGDLVERAEIAAKLLELRWSTNLTFDELPYRERRKSQGDELDKEKAKSESSKILRATTLQLPEGGKTEGVTIKMPVTDCGICDVADAGNLAKFQKSRTVNIGRRDRSVKKVSVNTPTSEQLSSLNLKEGRNTITFCFSTPMMGKRQIDARIFLWKWNTRIVISDVDGTITRSDVLGQFMPLVGIDWSQMGVAHLFSEIKENGYQILFLSARAISQAHHTRQFLLNLNQDGKVLPDGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIRALFPPDYNPFYAGFGNRDTDEISYLKVGIAKGKIFIINPKGEISVNRRCLDTKSYTSLHALVHGMFPPTESSEQEDFNSWNFWKLPTFE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00313 541 PANTHER LIPIN 287 539 IPR026058 -
Trre1g00313 541 Pfam LNS2 (Lipin/Ned1/Smp2) 297 519 IPR013209 -
Trre1g00313 541 Pfam lipin, N-terminal conserved region 25 96 IPR007651 -
Trre1g00313 541 SMART lns2 342 498 IPR031315 -
Trre1g00313 541 SUPERFAMILY HAD-like 335 482 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00313 Trre-Chr1 2240273 2244148 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00313 1 2240273 2244148 Trre1g00313 1 2240273 2244148 ECH
Trre1g00313 1 2240273 2244148 Trre5g04434 5 46445571 46448631 PCT