Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00311 ATGAGTGAGAAAATTGAAAACCCTGATATTGTTCATGGTCAAGCTGGGCAAAGCAAGAAAGGAGAGGATTTCACGCTGTTAAAGTCCGACTGTCAGAGGATGGTTGGTGATGGGGTCTATACATATTCCGTTTATGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCCAAGGAGAATCTTCTAAATAATATTTTAAGTGCAGTTCCTCCAGATCTTAACAGAGATGAATGGTTAGCAGCGTTGCCTAGAGCTATGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTGCTGAGAAAGGTCAAAAATCAGGAACAACTGTCACCTTTGTGATTATAGAAGGATGGGTTGTAACGGTTGCATCAGTTGGCGATTCCCGTTGCGTACTAGAATCTTCTGAAGGAGGGATTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAAAGGATTCGTATCACTTCTAGTGGGGGTGAGGTTGGTCGTTTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCCTGTGTCTTTCACGATCTATCGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCTTATGTTAAACAAGTGAAGCTATCCACAGGTGGAGGCCGGCTTGTTATCTGTAGTGATGGTGTCTGGGATGCTTTAGCTGCAGAAGTGGCCCTTGATTGTTGCCGCGGCATGTCAGCAGAGGCTTCTGCACCACAGATTGTAAAGGACGCTATACAAGCAAAGGGACTTAGAGATGATACAACCTGCATTGTTGTTGATATATTACCTCAGGAGAAGCCATCTGCTCCTGCGCCACCACCAAAGAAGCCAGTAAAAGGAATGCTCAAGGCCATGTTTCGTAAAAAGTCTTCGGAATCATCTTCTATTGACAAAGAATACTTGGAGCCAGATGTGGTAGTGGAGCTGTATGAGGAAGGCTCTGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTATGCAACATGTTCAAGCTGTTCATATGTGCAGTATGTCAAGTAGAAATAAAACCCGGAGAGGGCATTTCCGTACATGAGGGTGCAGACAACCCTCGAAAAGTGCGCCCCTGGGATGGACCTTTTCTTTGTTTTAGTTGCCAGGAGAAGAAAGAAGCCATGGAAGGGAAAAGAGCATCAGATAGAAATAGCAGCGGAAGTGATGAATGA 1224 0.4404 MSEKIENPDIVHGQAGQSKKGEDFTLLKSDCQRMVGDGVYTYSVYGLFDGHNGSAAAIYSKENLLNNILSAVPPDLNRDEWLAALPRAMVAGFVKTDKDFAEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSEGGIYYLSADHRLETNEEERIRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPYVKQVKLSTGGGRLVICSDGVWDALAAEVALDCCRGMSAEASAPQIVKDAIQAKGLRDDTTCIVVDILPQEKPSAPAPPPKKPVKGMLKAMFRKKSSESSSIDKEYLEPDVVVELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISVHEGADNPRKVRPWDGPFLCFSCQEKKEAMEGKRASDRNSSGSDE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00311 407 Gene3D - 11 280 IPR036457 -
Trre1g00311 407 SMART PP2C_SIG_2 34 273 IPR001932 -
Trre1g00311 407 SMART PP2C_4 1 271 IPR001932 -
Trre1g00311 407 SUPERFAMILY PP2C-like 14 273 IPR036457 -
Trre1g00311 407 ProSiteProfiles PPM-type phosphatase domain profile. 7 273 IPR001932 -
Trre1g00311 407 PANTHER PROTEIN PHOSPHATASE 22 272 IPR015655 GO:0004722|GO:0006470
Trre1g00311 407 Pfam Protein phosphatase 2C 37 262 IPR001932 -
Trre1g00311 407 CDD PP2Cc 16 273 IPR001932 -
Trre1g00311 407 MobiDBLite consensus disorder prediction 388 407 - -
Trre1g00311 407 FunFam probable protein phosphatase 2C 12 12 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00311 Trre-Chr1 2224626 2228810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00311 2 406 PP2C-type Phosphatase Gene Family AT1G47380 77.150 0.0 678
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00311 1 2224626 2228810 Trre1g00311 1 2224626 2228810 ECH
Trre1g00311 1 2224626 2228810 Trre5g04438 5 46472306 46476348 PCT