Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00296 ATGGAAGGAGTCACAAAGTTATCTGTTGAACAAATTCAACCACCTACTTATGGAAACTTGGTAACAATTCTTAGTATTGATGGTGGTGGTATTAGGGGACTTATTCCTGCTGCAATTATTGAATTCCTTGAATCTCACCTTCAGGAATTGGATGGTGAAGATGCAAGGCTTGCAGATTACTTTGATGTGATATCAGGAACAAGTACAGGTGGTCTTGTAACTGCCATGTTAGCTGCTCCAGATAAAAACAACCGTCCACTTTTTGCTGCCAAAGATATCAGACCCTTTTACCTTGAACATTGCCCAAAAATTTTCCCACAACATAGAGGCCTAGGTGGGACAATATTAGCCAAGGTAATGAGATCTCTTGGAGGACCCAAATATGATGGAAAATATCTTCATGAGGTTGTAAGAGAGAAACTTGGAGACATTAAGTTGCATGAGACCGTCACCAACATTGTTATTCCTACATTTGACATTAAGACTTTGCAGCCAATTATTTTCTCATCTTATCAGCTTAAGAATTCCTCTATTTTGGATGCTAAACTCTCAGACATATGCATTAGTACCTCAGCTGCACCTACTTATCTTCCTGCTCACAACTTTACAAATAAAGTTGGAGAAACTGAAGTAGAGTTCAATCTCATTGATGGTGGTGTTTGTGCAAATAACCCGGCTTTAGTTGCCATGAATGAAGTAACAAAACAAATTATCAAACAAAGTCCTGATTTCTTCCCCATCAAGCCACTTGAATATGGTCGGTTTTTGATAATTTCAATAGGCACTGGGACAGCAAAAAATGAGGAAAAATTCAATGCACAAATGGCAGCCAAATGGGGTTTATTGGATTGGCTAACACAGAGTGGTTCTAATCCTTTAATCGATGTTTTTACTCAATCAAGTGGTGATATGATTGATTTTCATTTATCTGCTGTCACTCAAGCTCTTCATTCAGAAGATAATTACCTTCGAATTCAGGATGATACATTAACTGGAATAGATTCTTCTGTTGATATTGCAACTGAGGCAAATTTGAAGAAATTGTGTCAAATTGGTGAGAATTTATTGAAGAAACCAGTCTCTAGAGTCAATTTAGAAAATGGACACTTTGAACCACTAACAACTGGGGAAACCAATGAAGATGCTCTCAAGAGGCTTGCAAAAATACTTTCACAAGAGAGAAGACTCCGTGAAATGAGATCACCGCACACAAGTAGAGGCAAGAAAGCCCGACATCTAGTTGTAGATTCGGCTTAA 1257 0.3811 MEGVTKLSVEQIQPPTYGNLVTILSIDGGGIRGLIPAAIIEFLESHLQELDGEDARLADYFDVISGTSTGGLVTAMLAAPDKNNRPLFAAKDIRPFYLEHCPKIFPQHRGLGGTILAKVMRSLGGPKYDGKYLHEVVREKLGDIKLHETVTNIVIPTFDIKTLQPIIFSSYQLKNSSILDAKLSDICISTSAAPTYLPAHNFTNKVGETEVEFNLIDGGVCANNPALVAMNEVTKQIIKQSPDFFPIKPLEYGRFLIISIGTGTAKNEEKFNAQMAAKWGLLDWLTQSGSNPLIDVFTQSSGDMIDFHLSAVTQALHSEDNYLRIQDDTLTGIDSSVDIATEANLKKLCQIGENLLKKPVSRVNLENGHFEPLTTGETNEDALKRLAKILSQERRLREMRSPHTSRGKKARHLVVDSA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00296 418 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 24 230 IPR002641 GO:0006629
Trre1g00296 418 MobiDBLite consensus disorder prediction 396 418 - -
Trre1g00296 418 FunFam Patatin 13 402 - -
Trre1g00296 418 SUPERFAMILY FabD/lysophospholipase-like 19 367 IPR016035 -
Trre1g00296 418 CDD Pat17_isozyme_like 18 368 - -
Trre1g00296 418 Pfam Patatin-like phospholipase 24 230 IPR002641 GO:0006629
Trre1g00296 418 Gene3D Cytosolic phospholipase A2 catalytic domain 10 402 - -
Trre1g00296 418 PANTHER XYLOSE ISOMERASE 9 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00296 Trre-Chr1 2153778 2156535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00296 12 403 Miscellaneous Gene Families AT2G26560 65.649 0.0 520
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00296 1 2153778 2156535 Trre1g00296 1 2153778 2156535 ECH