Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00289 ATGCAACAATCAAACGGCTCTGATTCATCGACGCAACAAAACCAACCGGAGACGAACAAACAACGGCAACAGACACCGCAACCGGTTGCGATACCACAACAGTGGGTTCCGATGCAGTATCCAACGGCTATGGTAATGCCACATCATATGATGCCACCTCAGCATTACGCGCCGCCGCCTTATGTACCTTATCATCACCACCATCACCATCAGTATCAGCAACCGTTGCACGTGCCACATCAGCAGCATCAGAATCATCAACAACAACAACATGGATCCAATGGTGAAAATAAGACTCTGTGGATTGGTGATTTACATAACTGGATGGATGAAAGTTATCTTCATCGCTGTTTTGCTTCCACCGGCGAGATTTCCTCTATCAAGGTTATTCGCAATAAGCATAGTGGTATTTCAGAGGGTTATGGATTTGTGGAATTTTTTTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAATTTTGATGCCAAATGCTGATCAAATGTTCCGTTTGAACTGGGCTACGTTTAGCACAGGAGACAAGGGTTCAGATAATGTTACTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGTGTGTTGCATGAAACTTTTGCTAGTTCATATCCTTCTGTCAAAGCTGCAAAAGTTGTTTATGATGCCAATACTGGCCGTTCAAAGGGCTATGGATTCGTCAGGTTTGGAGATGAAAACGAGAGATCTCAGGCCATGACTCAAATGAATGGCGTTTACTGTTCTAGCAGGCCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAAGATCTTAGGCAAACATTCTCCCAGTATGGTGAGATAGCCTCTGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTGCAATTTGCAAACAGAAACAATGCTGAAGAGGCTTTGCAGAAGCTAAATGGGACAATGATCGGCAAGCAAACCGTCCGTCTCTCTTGGGGCCGCAATCCAGCAAATAAACAGCTTAGGTTTGACTTCGGAAGCTGGGCTGGGCCATATTTTCCATCCCCTATTTATGACGGATACGGATATGCAATGCCTTCTCCCCATCATGATCCAAGCACGTATCCTCTAGCTTATGGAGGTTACCCCATTTATGGAGGCCACCAACAACAAGTAAGCTGA 1281 0.4442 MQQSNGSDSSTQQNQPETNKQRQQTPQPVAIPQQWVPMQYPTAMVMPHHMMPPQHYAPPPYVPYHHHHHHQYQQPLHVPHQQHQNHQQQQHGSNGENKTLWIGDLHNWMDESYLHRCFASTGEISSIKVIRNKHSGISEGYGFVEFFSHATAEKVLQNYAGILMPNADQMFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFASSYPSVKAAKVVYDANTGRSKGYGFVRFGDENERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQLRFDFGSWAGPYFPSPIYDGYGYAMPSPHHDPSTYPLAYGGYPIYGGHQQQVS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00289 426 MobiDBLite consensus disorder prediction 59 96 - -
Trre1g00289 426 SUPERFAMILY RNA-binding domain, RBD 68 179 IPR035979 GO:0003676
Trre1g00289 426 FunFam Polyadenylate-binding protein RBP47B 97 177 - -
Trre1g00289 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Trre1g00289 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 361 IPR000504 GO:0003723
Trre1g00289 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 164 IPR000504 GO:0003723
Trre1g00289 426 FunFam Polyadenylate-binding protein RBP47B 179 281 - -
Trre1g00289 426 Gene3D - 191 266 IPR012677 -
Trre1g00289 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723
Trre1g00289 426 FunFam Polyadenylate-binding protein RBP47 282 397 - -
Trre1g00289 426 MobiDBLite consensus disorder prediction 75 96 - -
Trre1g00289 426 MobiDBLite consensus disorder prediction 266 303 - -
Trre1g00289 426 CDD RRM3_NGR1_NAM8_like 295 366 - -
Trre1g00289 426 Gene3D - 61 190 IPR012677 -
Trre1g00289 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 87 372 - -
Trre1g00289 426 Gene3D - 273 374 IPR012677 -
Trre1g00289 426 SMART rrm1_1 192 266 IPR000504 GO:0003723
Trre1g00289 426 SMART rrm1_1 99 174 IPR000504 GO:0003723
Trre1g00289 426 SMART rrm1_1 297 364 IPR000504 GO:0003723
Trre1g00289 426 MobiDBLite consensus disorder prediction 271 302 - -
Trre1g00289 426 MobiDBLite consensus disorder prediction 1 28 - -
Trre1g00289 426 SUPERFAMILY RNA-binding domain, RBD 192 369 IPR035979 GO:0003676
Trre1g00289 426 CDD RRM2_SECp43_like 190 269 - -
Trre1g00289 426 CDD RRM1_SECp43_like 99 179 - -
Trre1g00289 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 368 IPR000504 GO:0003723
Trre1g00289 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00289 Trre-Chr1 2109277 2113819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00289 72 376 Eukaryotic Initiation Factors Gene Family AT4G34110 27.742 3.06e-32 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00289 1 2109277 2113819 Trre1g00289 1 2109277 2113819 ECH