Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00281 ATGACAGTCCTAACTGACGCAGTTTCTAGCGATATCATTTCGGATCTATGGAAAAATCTCGCTACTATTTCACACAAAACACTCAATTCCAAAGCTACTGCAGAAAATCTCTTAGCTTTCATCCGTGAAATTCTCCCAACAATCGAACAAATCAAATACTCCGGCGTCGAACTTCCTCAGCCCAGACAATCCCAACTCGACCGTTTCTCCGAGCTTCTCCGTTCCGGTGTTGAGCTTTCTCATCAAGCTTTAGCAACAAGTCGTTGGAATGTTTACAGAAATTTTCAGCTTGCTAGGAAAATGGAGAATCTCGAAGAAACTGTTACCAAATACTTGCAGGTTCCTTTGCAGGCTGAGATACTTGCTGATGTCAATCAGGTAAAGGTTGATATGGCGCAACGGTTCGATAGGATTGATGCGTCGAACCGGAGGATGGAGAGGTTTTTTGAGGGGATGAAGATTGGTGTTGGTGGTAGTAGTGGTAGTGGTGGTTGGATTGAGGAAGTTGTTAGGAGTTGTGAGGAAGATGAGGGTACTTTTGGGAATTTTAATTTGAGTTTTGGGTTGGAATTTGGGAAAAATAAGGTTGTTGAGATGGTTGTTGGAAGAAAAGATTTTTGTGTTGTTGGGATTTGTGGGATTGGTGGTTCGGGGAAAACCACTCTTGCTAAAGAGGTTTGCAGAGATGAACAACTGAGAAGTTACTTTAAAGAAAGAATTTTGTTTCTGACGGTCTCGCAGTCTCCTGATGTGGAGCAGCTGAGGGCAAAGATTTGGGGACACATCATGGGAAGTGGAAGCATGAATACCAATTTTGTTGTTCCGCAGTGGATGCCCCAATATGAATACGGCGGGAGCCAAGCTCAGATCCTGGTTATTCTCGACGATGTGTGGACACTTTCTGTGCTGGAGCAGCTAGTGTTTAGAATACCTTGTGTCAAATTCATTGTGGTTTCCAGGTTCCATTTCTCAGTTTTCAATGCAACTTACCAAGTGGAACCTCTCAGCGAAGATGATGCTTTGTCTTTGTTCTGTCACCACGCTTTCGGACAGAAATCAATCCCTTCCGCGGCTAATCAGAATTTAGTCAAACAGGTTGTGGCTGAGTGTGGAAAGCTTCCACTGGCTCTTAAAGTGATTGGAGCTTCGTTGCGAGATCAGAACGAAATGTTTTGGTTGAGTGTCAAAACAAGGCTTTCACAAGGGTTAAGCATAGGTGAATCCTATGAACTTAATCTGATTGATCGAATGGCAATCAGTACTAATTACTTGCCTGAAAAGATTAAAGAGTGCTTCTTGGACTTGTGTACCTTTCCAGAGGATAAAAAGATTCCTCTAGAAGTTTTAATTAATATGTGGGTTGAAATCCATGATATTCATGAAACAGAAGCATATGCTATTGTCGTTGAGCTTTCAAACAAGAATCTCCTCACCTTAGTGAAAGAAGCACGTGCTGGGGGAATGTATAGCAGTTGCTTCGAGATTTCTATTACTCAACATGATATACTAAGAGATGTTGCCCTTATTTTAAATAATCATGGGAGCGTTAACCAACGCCGAAGATTAGTAATGCCAAAACGAGATGATAATGGAGAACTTCCTAGAGAATGGTTGAGACATGCGGACCAACCGTTCGAAGCTCAAATTGTTTCAATTCAGACAGGTGAAATGAGAAAATGTGACTGGTGTAATTTGGAATTTCCTAAAGCTGAAGTGCTGATTATTAATTTCACATCTAGTGAATACTTCTTACCTCCTTTCATTAATAGAATGCCAAATTTGAGAGCATTAATAGTAATAAACCACAGCACTTCGTATGCACGTCTTCACAATATTTCGGTTTTGAAGAGCTTAACCAAATTGAGGAGCCTTTGGCTTGAAAAAGTTTCAATCCCACAGTTATCTGGCATAGTCATGGAAAGCTTGAGAAAATTGTTTATAGTCCTTTGTATGATTAACAACAATCTTGAAGGAAAAGACTCAAACCTAGCCGATATCTTCCCTAACATCTCTGAGCTCACACTTGATCATTGCGAAGATCTAACTGAGTTTCCTTCGAGTATTTGTAGGATACAGTCACTAAAAAACTTAAGTCTCACTAACTGTCATAATTTGACACGATTACCGATTGAATTAGGCTCGCTAAATTCTCTAGAGATTCTCCGGTTATATGCGTGTCCGGATTTGAGAACACTTCCTCCTAGCATCTGTCAAATGACTAGATTGAAGTATATTGATATTTCTCAATGTGTTAACCTTACAAGCTTCCCCGAAGCAATCGGTAAGTTGGTAAGCTTGGAGAAGATCGACATGAGGGAATGTCCGATGATTGCAAATATACCTAAGTCTGCATTATCATTGCATTCTTTGCAGCTTGTAATTTGTGACGAGGAAGTGTCTTCGACGTGGAAGGAAATTGGGAAGGCCAAGCCTAATCTCAATGTTCAAGTAGCAGAGATGCAATATGATCTCGATTGGTTAGATACCGACTAA 2493 0.4071 MTVLTDAVSSDIISDLWKNLATISHKTLNSKATAENLLAFIREILPTIEQIKYSGVELPQPRQSQLDRFSELLRSGVELSHQALATSRWNVYRNFQLARKMENLEETVTKYLQVPLQAEILADVNQVKVDMAQRFDRIDASNRRMERFFEGMKIGVGGSSGSGGWIEEVVRSCEEDEGTFGNFNLSFGLEFGKNKVVEMVVGRKDFCVVGICGIGGSGKTTLAKEVCRDEQLRSYFKERILFLTVSQSPDVEQLRAKIWGHIMGSGSMNTNFVVPQWMPQYEYGGSQAQILVILDDVWTLSVLEQLVFRIPCVKFIVVSRFHFSVFNATYQVEPLSEDDALSLFCHHAFGQKSIPSAANQNLVKQVVAECGKLPLALKVIGASLRDQNEMFWLSVKTRLSQGLSIGESYELNLIDRMAISTNYLPEKIKECFLDLCTFPEDKKIPLEVLINMWVEIHDIHETEAYAIVVELSNKNLLTLVKEARAGGMYSSCFEISITQHDILRDVALILNNHGSVNQRRRLVMPKRDDNGELPREWLRHADQPFEAQIVSIQTGEMRKCDWCNLEFPKAEVLIINFTSSEYFLPPFINRMPNLRALIVINHSTSYARLHNISVLKSLTKLRSLWLEKVSIPQLSGIVMESLRKLFIVLCMINNNLEGKDSNLADIFPNISELTLDHCEDLTEFPSSICRIQSLKNLSLTNCHNLTRLPIELGSLNSLEILRLYACPDLRTLPPSICQMTRLKYIDISQCVNLTSFPEAIGKLVSLEKIDMRECPMIANIPKSALSLHSLQLVICDEEVSSTWKEIGKAKPNLNVQVAEMQYDLDWLDTD 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00281 830 PRINTS Disease resistance protein signature 370 384 - -
Trre1g00281 830 PRINTS Disease resistance protein signature 689 705 - -
Trre1g00281 830 PRINTS Disease resistance protein signature 208 223 - -
Trre1g00281 830 PRINTS Disease resistance protein signature 284 298 - -
Trre1g00281 830 Gene3D - 415 506 IPR036388 -
Trre1g00281 830 Gene3D Ribonuclease Inhibitor 551 812 IPR032675 -
Trre1g00281 830 Gene3D - 187 329 IPR027417 -
Trre1g00281 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 435 IPR027417 -
Trre1g00281 830 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 3 827 IPR039203 GO:0050832
Trre1g00281 830 SUPERFAMILY L domain-like 571 794 - -
Trre1g00281 830 Gene3D - 334 412 IPR042197 -
Trre1g00281 830 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 14 138 IPR008808 -
Trre1g00281 830 ProSiteProfiles RPW8 domain profile. 1 150 IPR008808 -
Trre1g00281 830 Pfam NB-ARC domain 194 415 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00281 Trre-Chr1 2039016 2042301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00281 542 793 Receptor kinase-like Gene Family AT1G28440 24.710 3.57e-11 65.1