Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00280 ATGGGTGAGACAGATAACCACCAAGCACCACCGTCAGCTCAGGCACCGCCACCGGGGCCACCACCACAGAATCTGGGACTTTCAAGGGGACCCACTTGGACTCCAGCTGAACAACTTCTTCAACTTCATTATTGCATCCATTCAAATCCTTCTTTGCCGGAAGCATTGCTTTTGGCTTTTCAGCACTACATTGTGATGCTTGGAACAACAGTTCTGATTGCAAGTACTCTTGTACCTCTAATGGGTGGGAATCATGGTGATAAGGCTCGTGTGATTCAGTCATTGTTGTTTATGTCTGGTGTCAACACATTGTTTCATACTTGGTTTGGTTCAAGGCTTCCGGTCATTATGAGCGGATCACTTGCTTTCTTTCTTCCGGTGATGTCGATCATAAATGATTACAATGATCAAACTTTTCCATCAGAGCATGAGAGGTTTAAATACACAATGAGAACAATTCAAGGATCTCTCATTGTTTCATCTTTCGTCAATATCTTCCTTGGATATAGTAAGACATGGGGAAATTTAACAAGGCTGTTTAGTCCCATCGTCATTGTACCTGTGGTATGTGTGGTCGGTCTTGGTCTCTTCGCGAGGGGCTTTCCATTGCTTGCAGATTGTGTGCAGATTGGGCTACCTATGCTCATTCTATTGATCTTAACACAGCAGTATTTGAGGCGCCTTCATGCTAAGGCAGATCATATACTTGAGAGGTTTGCTTTACTTGTCTGCATTGCTGTTGTTTGGGCTTTCGCTGCTATCCTTACAGTGGCTGGTGCGTATAACAATTCCAAAGCAAGGACTCAAACAAGTTGTCGCACAGATCGTTCGTACCTTATGTCTTCTGCTCCTTGGATTAAAGCGCCATTACCATTTCAGTGGGGTACTCCCATATTCAAAGCTAGTCATGTCTTTGGGATGATGGGGGCAGCACTTGTCTCTTCTGCTGAGTCAACCGGTACTTACTTCGCCGCGGCTAGGCTTTCTGGTGCAACACCTCCTCCTGCACATGTGCTCAGCCGAAGCATCGGGCTGCAGGGCATTAGTATGCTGCTTGAAGGCATTTTTGGCTGCTGTGTTGGCACTACAGCATCTGTTGAAAATGTCGGTCTTCTCGGTCTCACTCATATAGGGAGCAGAAGAGTGGTGCAAATATCATGTGGTTTCATGATTTTCTTCTCTATTTTTGGAAAATTCGGAGCCTTTTTCGCATCAATTCCCTTACCAATATTTGCTGCTATATACTGTGTTTTATTCGGAGTTGTTGCTGCTACTGGGATTTCATTTATACAATTTGCAAATAACAACTCCATAAGAAATATCTATGTTTTCGGCTTAACCTTGTTTCTCGGAATCTCAATTCCTCAATATTTTGTCATGAACACTGCACCAAATGGTCATGGTCCTGTTAGAACAAACGGTGGATGGTTTAATGATATATTGAACACCATATTCTCATCTCCACCAACTGTGGCAATAATAGTTGGGACAGTACTTGACAACACACTTGAAGCCAAGAAAACAGCTGTGGACAGAGGACTTCCATGGTGGGTTCCTTTCCAGAATAAGAAGGGAGATGTTAGAAATGATGAATTTTACCGCTTTCCGCTCAGGTTAACTGAATATATTCCTACTAGATTTCTCTAG 1647 0.4341 MGETDNHQAPPSAQAPPPGPPPQNLGLSRGPTWTPAEQLLQLHYCIHSNPSLPEALLLAFQHYIVMLGTTVLIASTLVPLMGGNHGDKARVIQSLLFMSGVNTLFHTWFGSRLPVIMSGSLAFFLPVMSIINDYNDQTFPSEHERFKYTMRTIQGSLIVSSFVNIFLGYSKTWGNLTRLFSPIVIVPVVCVVGLGLFARGFPLLADCVQIGLPMLILLILTQQYLRRLHAKADHILERFALLVCIAVVWAFAAILTVAGAYNNSKARTQTSCRTDRSYLMSSAPWIKAPLPFQWGTPIFKASHVFGMMGAALVSSAESTGTYFAAARLSGATPPPAHVLSRSIGLQGISMLLEGIFGCCVGTTASVENVGLLGLTHIGSRRVVQISCGFMIFFSIFGKFGAFFASIPLPIFAAIYCVLFGVVAATGISFIQFANNNSIRNIYVFGLTLFLGISIPQYFVMNTAPNGHGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLEAKKTAVDRGLPWWVPFQNKKGDVRNDEFYRFPLRLTEYIPTRFL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00280 548 Pfam Permease family 55 458 IPR006043 GO:0016020|GO:0022857|GO:0055085
Trre1g00280 548 NCBIfam purine/pyrimidine permease 56 463 - -
Trre1g00280 548 MobiDBLite consensus disorder prediction 11 25 - -
Trre1g00280 548 MobiDBLite consensus disorder prediction 1 30 - -
Trre1g00280 548 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 36 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00280 Trre-Chr1 2025578 2029679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00280 35 544 Organic Solute Cotransporters AT2G34190 57.059 0.0 611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00280 1 2025578 2029679 Trre1g00280 1 2025578 2029679 ECH