Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00276 ATGGTTGGAATTGGAGGACAACAAATCTATGTTGGAAGCAAATCATGGCAGGAAGATATTTACTGGACTCATTTTCAGTTCATCCATTTCACTCAATTTCTCACCACTGATTTTCAACAACAACTTGCACTTCCGAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCAGAAAATGCGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGACAACTAAAGATGATATTGTTTATTTCTCGAACGGCTGGCAACAATTCCTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTGTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGTGAGAAAGCAGCTTCTTATTTTGTCGGAAAATGTGGACATACTCAAACTGAACAAGGGGATAGCAAGGCAAAGGAAACAAACAATTCTGTTGAAGAAATCAATACTGCTTCTAATGGTGGTGTTGATTGTGGTTCACCTGAGAAATATCGGCGTCTTAATAATATACGAACACCATTAGCTGTACCTTTTGAAACTACCAATGGAGAGACTTTTAATGCTGGTGTTGAATCTGCTTCCCCTGAGAAATTGATGGCTGATGCACTCACTAAGACCAAAACTATACAGTTTCCCTTCCAACCAACTGGCAAAAGGACCAAGAAGCCTGTTAATGAAGTTACGCCTACGCCTGTCCAGAAGACTAAGAAGCGAGGGAGACCATTCAAAGCAGCTCATTCTTGTGATTTGGCGGGTTGTAACAAGGAAAACTCAGAGGCATCTATCCTGAATAGAAGTGGCAAGGAAGATGAACATCATGTTCTTAGCAGCGGAGCTTCACTTTCAAGGTCATCAGTATGTCATGAGAAAAAGATAGCCCAGTCATTTAGCTCCACTTTTCCATATTTTGTTAAAATAATGAAATCGTTCAATGTCAGTGGTTCTCGTATTCTGAATATACCATCGAAATTTTCGAAAGCACATCTTCCAAACTCCAAGATACAGATTATTCTTCATAATTTGAAGGGAGAAAAGTGGACTGTTAATGCTGTTCCAACGACTAAATTGCAGACAAGTCACACTATGTGTGGAGGATGGTTGGATTTTGTTCGTGGCAACAAAGTAAAGGTTGGAGATGTCTGCATTTTCGAACTTATAGGTGAGTGTGAATTACGTGTTCGTATCGCTGAGGTTGGAAAAGATGGGCTAGAAGACTCCCAGGTTGGAAAACAAGCTTCTAGTATGCCTAGTACAAGGCATGCTGTCGCTCGCCACAAGACTTCCAGTTCGAGATATAAGTCAAAGAGTTCTAAATTCAGCTCAAAGCACAGAAAGAAAGTTGTTGCATCAGATAAAAAGTTGTCAAAAATTGGTCAAGAAGCTGTTTCATCCATTGAGTTGAAGAAATCTGAGGTTGGAAAGGAAGGTCTTGACAATCAAAATGGGCATGTGACCCTAAGTACCTAG 1491 0.397 MVGIGGQQIYVGSKSWQEDIYWTHFQFIHFTQFLTTDFQQQLALPKTFSNNVKKKLPENATLKGPSGVVWNIGLTTKDDIVYFSNGWQQFLKDHSLKENDFLVFKYNGESHFEVLIFDGESFCEKAASYFVGKCGHTQTEQGDSKAKETNNSVEEINTASNGGVDCGSPEKYRRLNNIRTPLAVPFETTNGETFNAGVESASPEKLMADALTKTKTIQFPFQPTGKRTKKPVNEVTPTPVQKTKKRGRPFKAAHSCDLAGCNKENSEASILNRSGKEDEHHVLSSGASLSRSSVCHEKKIAQSFSSTFPYFVKIMKSFNVSGSRILNIPSKFSKAHLPNSKIQIILHNLKGEKWTVNAVPTTKLQTSHTMCGGWLDFVRGNKVKVGDVCIFELIGECELRVRIAEVGKDGLEDSQVGKQASSMPSTRHAVARHKTSSSRYKSKSSKFSSKHRKKVVASDKKLSKIGQEAVSSIELKKSEVGKEGLDNQNGHVTLST 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00276 496 CDD B3_DNA 29 118 IPR003340 GO:0003677
Trre1g00276 496 MobiDBLite consensus disorder prediction 415 431 - -
Trre1g00276 496 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Trre1g00276 496 MobiDBLite consensus disorder prediction 221 249 - -
Trre1g00276 496 Gene3D - 294 407 IPR015300 -
Trre1g00276 496 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 409 IPR044837 -
Trre1g00276 496 MobiDBLite consensus disorder prediction 432 458 - -
Trre1g00276 496 MobiDBLite consensus disorder prediction 221 240 - -
Trre1g00276 496 CDD B3_DNA 309 403 IPR003340 GO:0003677
Trre1g00276 496 MobiDBLite consensus disorder prediction 413 464 - -
Trre1g00276 496 ProSiteProfiles B3 DNA-binding domain profile. 311 407 IPR003340 GO:0003677
Trre1g00276 496 Gene3D - 23 123 IPR015300 -
Trre1g00276 496 SUPERFAMILY DNA-binding pseudobarrel domain 25 118 IPR015300 -
Trre1g00276 496 Pfam B3 DNA binding domain 39 118 IPR003340 GO:0003677
Trre1g00276 496 Pfam B3 DNA binding domain 311 403 IPR003340 GO:0003677
Trre1g00276 496 SMART B3_2 311 407 IPR003340 GO:0003677
Trre1g00276 496 SMART B3_2 30 120 IPR003340 GO:0003677
Trre1g00276 496 SUPERFAMILY DNA-binding pseudobarrel domain 304 404 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00276 Trre-Chr1 1996351 1999959 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g00276 B3 1.2e-14 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00276 1 1996351 1999959 Trre1g00276 1 1996351 1999959 ECH