Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00274 ATGGGAGGTGTTGGGAGGAAGATATCATGGCAGGAAGATATTTACTGGACCCATTTCCAGTTCATCCATTTCACTCAATTCCTCACCACTCATTTTCAACAACAACTTGCACTTCCTAAAACATTTTCAGACAATGTAAAGAAGAAATTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGGATGTAGGGCTGACAACTAAAGATGATGCTGTTTACTTCACGAACGGCTGGCAACAATTCTTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTGTTTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGTGAGAAAGCAGCTTCTTATTTTGTCGGAAAATGTGGACATACTCAAACTGAACAAGGGGATAGCAAGGCAAAGGAAACAAACAATTTTGTTGAAGAAATGAATACTGCTTCTAATGGCGGTGTTGAATGTGGTTCACCTGAGAAATATCGGCGTCGTAATAGTATACGAACACCGTTAGCTGTACCTTTTGAAACTACCAATGGAGAGACTTTTAATGCTGGTGTTGAATATGCTTCCCCTGAGAAATTGATGGCTTATGCACTCACTAAGACCAAGAAGCCTGTTAATGAAGTTACGCCTACGCCTGTCCAGACTAAGAAGCGAGGGAGACCATTCAAAGCAGCTCATTCTTGTGATTTGGTGGCTTGTAACAAGGAACACTCAGAGGCAGCTATCCCGTGTAGAAGTGGGAAAGAAGACGACCATAATATTCTCCGCGGAGCTTCACTGTCAAAGTTATCAGCTCCTAACGAGAAAGAGATAGCCCAATCATATACTTCCTCTTTTCCATATTTTGTTAAAATAATCCAAAAGTTCAATGTTGGTGGTTCATGTTTGCTGAATGTACCATCTCAATTTTCGAAAGCACATCTTCCAAACCAGATAATAAAGATTATTCTACATAATTTGAAGGGAGAACAGTGGACTGTTAATTGTGTTAATAGAGATTCTAGTCATACATATCACACTATATGTGGAGGGTGGATAGATTTTGTTCGTGGTAATGACATACAGGTTGGAAATGTTTGCATATTCGAACTTATACGTGAGAATGAATTACGCGTTCGTATCGCTGAGGTTGGAAAAGATGGACTAGACTTTCAGGATGAAAAAGTAGATTTTAGTGTGCCTAGTGCAAGACAAGATGGTTCTTGGCGTAAACGAAGGCAGTGGCGAGGATAA 1254 0.3987 MGGVGRKISWQEDIYWTHFQFIHFTQFLTTHFQQQLALPKTFSDNVKKKLPENVTLKGPSGVVWDVGLTTKDDAVYFTNGWQQFLKDHSLKENDFLVFKYNGESHFEVLIFDGESFCEKAASYFVGKCGHTQTEQGDSKAKETNNFVEEMNTASNGGVECGSPEKYRRRNSIRTPLAVPFETTNGETFNAGVEYASPEKLMAYALTKTKKPVNEVTPTPVQTKKRGRPFKAAHSCDLVACNKEHSEAAIPCRSGKEDDHNILRGASLSKLSAPNEKEIAQSYTSSFPYFVKIIQKFNVGGSCLLNVPSQFSKAHLPNQIIKIILHNLKGEQWTVNCVNRDSSHTYHTICGGWIDFVRGNDIQVGNVCIFELIRENELRVRIAEVGKDGLDFQDEKVDFSVPSARQDGSWRKRRQWRG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00274 417 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 387 IPR044837 -
Trre1g00274 417 SUPERFAMILY DNA-binding pseudobarrel domain 19 112 IPR015300 -
Trre1g00274 417 SMART B3_2 24 114 IPR003340 GO:0003677
Trre1g00274 417 SMART B3_2 289 385 IPR003340 GO:0003677
Trre1g00274 417 CDD B3_DNA 23 112 IPR003340 GO:0003677
Trre1g00274 417 Pfam B3 DNA binding domain 32 112 IPR003340 GO:0003677
Trre1g00274 417 Pfam B3 DNA binding domain 289 381 IPR003340 GO:0003677
Trre1g00274 417 Gene3D - 271 385 IPR015300 -
Trre1g00274 417 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Trre1g00274 417 CDD B3_DNA 287 381 IPR003340 GO:0003677
Trre1g00274 417 ProSiteProfiles B3 DNA-binding domain profile. 289 385 IPR003340 GO:0003677
Trre1g00274 417 Gene3D - 17 117 IPR015300 -
Trre1g00274 417 SUPERFAMILY DNA-binding pseudobarrel domain 284 381 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00274 Trre-Chr1 1985796 1989863 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g00274 B3 5.6e-14 CL0405