Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00262 ATGTTTGGGGACAACAAAAACAAAAACAACAACGATGGCAACAACAACAACAATACCAATATTCCTCGTCCTCAGTTCATGCAATCAGAACCTCGATTTTCCACAACGGAAGCCTATACCGATGATGACTACGCCATGCGTAGCAGCAGTGCCGCATCCCCCATGAGCCCTTACTGCTATGACCCCGGCAGGTTAAGTGGTGAGGGCTCGCCAATGATGATGTCTCCATGGAATCAAACAACAAATTCTCCATTCGCAAAGCCACAATGGACACAATACGAAGAAGCACCCCCACAAAATTCTCTAATTGGTTCACTGGTTCGTGAAGAAGGACACATATATTCGTTGGCAGCTTCCGGCGACTTATTATACACTGGCTCAGATAGTAAGAACATTCGCGTGTGGAAGAATCTCCAAGAATATTGTGGATTCAAATCCAACAGTGGATTGGTAAAAGCAATAATAATCTCCGGTCAAAAAATCTTCACCGGTCACCAAGATGGTAAAATCAGAGTTTGGAAAGTTTCTCTCAAGAACCCTAGCATTCACAAACGCGCTGGAACATTACCAACACTCAAGGATATTTTCAAAAGCTCGATTAAACCAAGCAATTACGTTGAGGTTCGTAAACACCGAACTGCATTATGGATCAAACATTCTGACGCTGTTTCATGTCTCAGTCTTTCTCCAGACAAAAACTACCTCTACTCGGCTTCATGGGACAGAACAATCAAAGTTTGGAGAATCTCTGATTCTAAGTGCTTGGAATCGATTACTTGCCATGAAGACGCTGTTAACTCCGTTGTCTGTGGAAATGACGGAATTGTTTTCTCCGGTTCCGCAGATGGAACTGTTATGGTGTGGCGCAGGGAAACACGTGGGAAAGGAACGAAGCACGTGCAGGTTAAACAACTTTTAAAACAAGAATGTGCAGTAACTGCTTTAGCAGTGGATCCCACAGGATCAATGGTGTATTGTGGTGCTTCTGATGGGTTAGTTAATTTTTGGGAATGTGATAAGCAATTTGCACACGGTGGGGTCCTTAAAGGTCATAAACTTGCTGTTTTGTGTTTAGCTTCTGCGGGGAATTTGGTATTTAGTGGTTCAGCTGATAAAACTATATGTGTGTGGAAAAGAGATGGTGTTATTCACACTTGTGTGTCTGTTTTAACGGGACATGATGGTCCCGTTAAGTGTTTAGCAGTGGAACAGGATCGCGAATCTGATGCTAGAGGTGATCAACGGTGGGTATTGTACAGTGGGAGTTTGGATAAATCGGTTAAGGTTTGGAGTGTTTCGGAGAGTCTGCAGCAGGTACGTATGTCTTCTGATGGGTCTTCATTACCTTCTGAATCTGATAGCAGTTTTTCTTCGAGTCGGGCTGGTAATAATAATAAGAGGAATTAA 1407 0.4314 MFGDNKNKNNNDGNNNNNTNIPRPQFMQSEPRFSTTEAYTDDDYAMRSSSAASPMSPYCYDPGRLSGEGSPMMMSPWNQTTNSPFAKPQWTQYEEAPPQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSLKNPSIHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKNYLYSASWDRTIKVWRISDSKCLESITCHEDAVNSVVCGNDGIVFSGSADGTVMVWRRETRGKGTKHVQVKQLLKQECAVTALAVDPTGSMVYCGASDGLVNFWECDKQFAHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKRDGVIHTCVSVLTGHDGPVKCLAVEQDRESDARGDQRWVLYSGSLDKSVKVWSVSESLQQVRMSSDGSSLPSESDSSFSSSRAGNNNKRN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00262 468 Gene3D - 77 210 IPR015943 GO:0005515
Trre1g00262 468 PRINTS G protein beta WD-40 repeat signature 235 249 IPR020472 -
Trre1g00262 468 PRINTS G protein beta WD-40 repeat signature 418 432 IPR020472 -
Trre1g00262 468 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Trre1g00262 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 288 IPR001680 GO:0005515
Trre1g00262 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 378 IPR001680 GO:0005515
Trre1g00262 468 CDD WD40 110 431 - -
Trre1g00262 468 Pfam WD domain, G-beta repeat 346 378 IPR001680 GO:0005515
Trre1g00262 468 Pfam WD domain, G-beta repeat 253 288 IPR001680 GO:0005515
Trre1g00262 468 Pfam WD domain, G-beta repeat 310 336 IPR001680 GO:0005515
Trre1g00262 468 Pfam WD domain, G-beta repeat 385 431 IPR001680 GO:0005515
Trre1g00262 468 Pfam WD domain, G-beta repeat 110 136 IPR001680 GO:0005515
Trre1g00262 468 Pfam WD domain, G-beta repeat 219 247 IPR001680 GO:0005515
Trre1g00262 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 257 IPR001680 GO:0005515
Trre1g00262 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 253 - -
Trre1g00262 468 FunFam BnaA09g28200D protein 206 293 - -
Trre1g00262 468 Gene3D - 299 467 IPR015943 GO:0005515
Trre1g00262 468 Gene3D - 211 298 IPR015943 GO:0005515
Trre1g00262 468 MobiDBLite consensus disorder prediction 439 468 - -
Trre1g00262 468 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 51 435 IPR045182 -
Trre1g00262 468 SMART WD40_4 137 174 IPR001680 GO:0005515
Trre1g00262 468 SMART WD40_4 341 378 IPR001680 GO:0005515
Trre1g00262 468 SMART WD40_4 298 337 IPR001680 GO:0005515
Trre1g00262 468 SMART WD40_4 209 248 IPR001680 GO:0005515
Trre1g00262 468 SMART WD40_4 383 431 IPR001680 GO:0005515
Trre1g00262 468 SMART WD40_4 99 136 IPR001680 GO:0005515
Trre1g00262 468 SMART WD40_4 251 289 IPR001680 GO:0005515
Trre1g00262 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 337 IPR001680 GO:0005515
Trre1g00262 468 SUPERFAMILY WD40 repeat-like 104 451 IPR036322 GO:0005515
Trre1g00262 468 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00262 Trre-Chr1 1899083 1900951 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03910 5 40238591 40242262 Trre1g00262 1 1899083 1900951 PCT