Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00252 ATGGCGAAATCCAGCGCCGACGATGTTGAACTCCGGCGAGCTTGCGAGGCTGCAATTGAAGATCCTAAGCAGAAGATCATCTTATCACTTCGTGTTGCCAAGAGTCATGGGATCTTAGGAAAATCTTCCAAGCTTGGCCGTCAAATGGCCAAGCCTAGGGTTCTTGCTCTATCCACATTAACAAAGGGTCAGACGACTACAGTTTTTCTTCGAGTTTTGAAGTATTCTACGGGAGGAGTTCTTGAACCTGCAAAACTATACAAGCTAAAGCATCTCTCAAAAGTAGAAGTTTTAACAAATGATCCCAGTGGATGTACATTTACGCTGGGATTTGATAACCTTAGAAGCCAGAGTGTGGCTCCTCCGCAATGGTCAATGCGGAATATTGATGACAGGAATCGTCTCCTTCTTTGTATCTTGACCATCTGTAAAGATGTTTTGGGTCGCCTTCCCAAGGTCGTCGGTATAGATGTTGTGGAGATGGCTCTCTGGGCTAAGGAAAATAGAGCCCCTGTTTCTACACAAAGTAATGTGCAAGATGGTGGTCCTGTTGCGTCCACTATGACTGAGAGAGAGTTGAAAGTCAATGTTGAAAAAGACCTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACTTATGTCATCGGTGTTGGTGAAGCAGAGGAATTTTCTGAAAGACTGAAGAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAGCCTTTGATACATGAGGTGTTGTATGGGCTTGAAGCAGCAACAAGTTGTGTTGAAGATATGGATGAATGGTTAGGCACATTCAATGTTAAACTTCGGCACATGAGGGAGGATATTGCATCAATAGAAACCCGTAATAACAGCTTACAAATGCAATCGGTAAATAACAAATCTCTTATTGAGGAGCTTGATAAGCTTCTTGAGCGGTTGCGTGTCCCTTCTGAGTATGCAACATGCTTGACAGGAGGTTCATTTGATGAAGATCGGATGCTTCAAAATGTAGAAGCATGTGAATGGCTGACTAGTGCCTTGCGTGGTCTTGAAGTGCCCAATATTGACCCTACTTATGCAAGCATGAGAGCTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCCGGAGAGCTTCTGAATTCTTGAGAAATTACTTTGCTAGTTTGGTGGACTTCATGATAAGTGATAAAAGTTACTTTTCTCAGCGAGGACAGTTGAAGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTTCAACATTTGAAGAGTCTCGACAAGAATTGCTTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAATTTGCTTCTTCGCCGGGAGGCCCGGGAGTTCGCAAACGAACTCCGTGCTAGTACAAAAGCATCTAGAAATCCAACTGTTTGGCTTGAAGGTTCAACTGGTTCTGGTCAGAATGTAAATGCTACTGATACTTCTACAGTCTCCGATGCTTATGCAAAGATGCTCACAATTTTTATCCCACTTCTGGTTGATGAGAGTTCGTTTTTTGCACACTTCATGTGCTTTGAAGTTCCCACACTTGTTCCTCCAGGAGGTATTGTCAACGGCAATAAAGCTGGTTACGACGACGATGATGATTTGGGAATTATGGACATTGATGAGAATGACGGTAAATCTGGAAAACATTCTGCTGAGCTTGCAGCCTTAAATGAATCGCTTCAGGATTTACTCGACGGAATTCAAGAAGACTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTACGCTGCATATCAATGCATGGAATAACAGAACGCTATCTTTCTGGTCAAAAAGCTGATGCAGCAGGATTTGTACGCCTTTTGCTCGGCGACCTAGAATCTCGGATATCTATGCAGTTCAGCCGTTTTGTAGATGAAGCTTGCCATCAAATTGAAAGAAATGAACGCAACGTTCGCCAAATGGGTGTCCTATCCTACATTCCCAGATTTGCAACCCTTGCAACTCGTATGGAGCAGTACATTCAGGGACAGTCTAGGGATTTGGTTGACCAAGCGTATACAAAATTTGTTAGCGTAATGTTTGCAACCTTGGAAAAAATATCACAAACAGATCAAAAGTATGCAGATATTTTTCTTTTTGAGAACTATGCCGCCTTTCAGAATAGTTTGTATGACCTCGCCAACATTGTGCCCACTTTGGCCAAGTTTTATCATCAGGCCAGTGAAGCCTATGAACAAGCTTGCACACGCCATATTAGCATGATTATATACTTTCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAGGACTTGATGTTCACTGTTGCACCTGAAGAGATACCTTTCCAGCTTGGGCTGTCAAAAATGGATCTTCGGAAAATGCTAAAATCCAGCTTATCTGGGATTGACAAATCGATTAATGCGATGTACAAGAAGCTACAGAAGAATTTGACTTCAGAAGAACTGTTACCTTCCTTATGGGACAAATGCAAGAAGGAGTTTCTTGACAAGTACGAAAGTTTTGCCCAACTTGTGGCTAAGATTTACCCTAATGAGACAATCCTATCTGTTGCAGAGATTAAAGAACAGTTAGCTAACATGTAA 2652 0.4261 MAKSSADDVELRRACEAAIEDPKQKIILSLRVAKSHGILGKSSKLGRQMAKPRVLALSTLTKGQTTTVFLRVLKYSTGGVLEPAKLYKLKHLSKVEVLTNDPSGCTFTLGFDNLRSQSVAPPQWSMRNIDDRNRLLLCILTICKDVLGRLPKVVGIDVVEMALWAKENRAPVSTQSNVQDGGPVASTMTERELKVNVEKDLVSQAEEEDMEALLGTYVIGVGEAEEFSERLKRELQALEAANVHAILESEPLIHEVLYGLEAATSCVEDMDEWLGTFNVKLRHMREDIASIETRNNSLQMQSVNNKSLIEELDKLLERLRVPSEYATCLTGGSFDEDRMLQNVEACEWLTSALRGLEVPNIDPTYASMRAVKEKRAELEKLKSTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGIVNGNKAGYDDDDDLGIMDIDENDGKSGKHSAELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSVMFATLEKISQTDQKYADIFLFENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYFQFERLFQFARRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGIDKSINAMYKKLQKNLTSEELLPSLWDKCKKEFLDKYESFAQLVAKIYPNETILSVAEIKEQLANM 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00252 883 Pfam Exocyst complex component Sec3 224 485 IPR019160 GO:0000145|GO:0006887
Trre1g00252 883 Pfam Exocyst complex component Sec3 578 867 IPR019160 GO:0000145|GO:0006887
Trre1g00252 883 Coils Coil 281 318 - -
Trre1g00252 883 Coils Coil 221 248 - -
Trre1g00252 883 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Trre1g00252 883 PANTHER SEC3/SYNTAXIN-RELATED 49 879 - -
Trre1g00252 883 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00252 Trre-Chr1 1813166 1826845 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00252 1 1813166 1826845 Trre1g00252 1 1813166 1826845 ECH
Trre1g00252 1 1813166 1826845 Trre5g05556 5 55960393 55979129 PCT