Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00239 ATGGGTTGGCTTAGTAGAATTTTTAAAGGCTCTGACCATAAGGATGTTTGGGCTGAGAATGATAATGAATATATCGACCGTGCTATTGCACTGTCTTTAGCGAAAGACAATCATAAAGCGAAAAAAGTTAAAGACCATAAATCACAGTTAGAAGAAGATGAACAACTTGCCGGAGCTATAGAAGAAAGCCTAAATTTGGAGTCACCTCCCAAACATGGAAATGATAATAATAATAATATGTATCAACCAAATCAGTATTTCCCAATGCGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCATATCTGGAAATTACCCTTACCATAAAGCATGCTATAAGGAAAGCTACCATCCTAAATGTGATGTCTGCAAGCACTTAATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACCCCCATTCTGGAATCAGCATTATTGTCCTTCACATGAACATGATAATACTCCTCGCTGTTGTAGCTGTGAGCGAATGGAGCCACAAGGGACAGGATATATTGCCCTTAAGGATGGAAGGAAGCTCTGTTTAGAGTGTCTTGATTCTTCTTTCATGGATACTAATGAATGCCAGCCCCTTCATGCTGATATACTAAAGTTCTATGAAAGCATAAATATGAGACTGGATCAGCAAGTTCCTCTACTGTTGGTTGAAAGACAAGCACTTAACGAAGCAAGGGAGGGAGAGAAAAATGTGAGTGAAAATACATTTCACCTGTGCAAATTACATGTGGACAAAGAATCTGTTGGAGGGTGTGGAGGAATAATTGGAAGAAAGAAAGGTGCTGTAGCAATCCGTATTAACTACAATGGCATAAGTTTGGTATTCATCTCTTGCCACCTCTCTGCTCATGGTCGTAATGTGGAAGAAAGAAACTATGAATGCAGGCATATATCACACTCTCTCTTCTCCAAGACTTGGAACCCATATTCTAGATCAGCCCACATGATTGTTTGGCTAGGAGATCTTAACTATAGGCTTCAAGGGATTGATACACATCCTGCCAGGAACCTAATAAACAAAGACCTTCACCATAAGCTGCATGGTAATGATCAGCTCTTGCAACAAGCTGGAGAAGGACAAATTTTCAATGGATTTTGTGAGGGGACATTGACATTCAAACCAACATATAAGTATAATAAAGGAAGTAGCAATTATGACACAAGTCACAAGGTTAGAGTTCCAGCATGGACAGATCGTATACTATTCAAGATAGAAGACACAGATAACGTGGAAGCAACACTACATTCCTACGAGTCGTTGGATGAAATATACGGTTCTGATCATAAGCCAGTAAAAGCACACATCTGCTTAAGACTTGGTCAAACTCAATCCTCCAATTAA 1464 0.4003 MGWLSRIFKGSDHKDVWAENDNEYIDRAIALSLAKDNHKAKKVKDHKSQLEEDEQLAGAIEESLNLESPPKHGNDNNNNMYQPNQYFPMRYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSISGNYPYHKACYKESYHPKCDVCKHLIPTNPAGLIEYRAPPFWNQHYCPSHEHDNTPRCCSCERMEPQGTGYIALKDGRKLCLECLDSSFMDTNECQPLHADILKFYESINMRLDQQVPLLLVERQALNEAREGEKNVSENTFHLCKLHVDKESVGGCGGIIGRKKGAVAIRINYNGISLVFISCHLSAHGRNVEERNYECRHISHSLFSKTWNPYSRSAHMIVWLGDLNYRLQGIDTHPARNLINKDLHHKLHGNDQLLQQAGEGQIFNGFCEGTLTFKPTYKYNKGSSNYDTSHKVRVPAWTDRILFKIEDTDNVEATLHSYESLDEIYGSDHKPVKAHICLRLGQTQSSN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00239 487 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 86 119 - -
Trre1g00239 487 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 181 - -
Trre1g00239 487 Pfam Protein DA1 244 274 IPR022087 -
Trre1g00239 487 SMART i5p_5 211 484 IPR000300 GO:0016791|GO:0046856
Trre1g00239 487 Gene3D Endonuclease/exonuclease/phosphatase 270 487 IPR036691 -
Trre1g00239 487 CDD LIM_DA1 94 146 - -
Trre1g00239 487 PANTHER PROTEIN DA1-RELATED 2 18 276 IPR045218 -
Trre1g00239 487 SUPERFAMILY DNase I-like 298 479 IPR036691 -
Trre1g00239 487 FunFam Protein DA1-related 1 88 147 - -
Trre1g00239 487 Pfam LIM domain 94 148 IPR001781 -
Trre1g00239 487 ProSitePatterns LIM zinc-binding domain signature. 94 128 IPR001781 -
Trre1g00239 487 ProSiteProfiles LIM domain profile. 92 152 IPR001781 -
Trre1g00239 487 Gene3D Cysteine Rich Protein 90 153 - -
Trre1g00239 487 SMART lim_4 93 145 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00239 Trre-Chr1 1743820 1748334 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g00239 LIM 1.1e-08 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00239 1 1743820 1748334 Trre1g00239 1 1743820 1748334 ECH