Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00230 ATGGACTTCGTTTTTCTTAGCTTTAGTTCATGCATGCCGTTCAGATTTCGTTTTAAGCTTTCACTTGTCATCGTCGTTTTCCAGATTGTATTGATATTGGCATGGTTGGAAGCAAATAATGTAACGGCCCAAGAACAATTTCAATGGGGAGGATTGGAAGGGAAGGTTGAGAAAATTGACTCACACTCTTGCATACACGACCATATACTTGAACAGAGAAAGCGACCTGGTCATAAGGTGTATTCAGTTACCCCACAAGTTTACGAGCCTGGTAGATCGGAGCCCCTTCAGCATAAAGGTAGGGCATTACTTGGTATATCAACATCGTCAAAGCCCCAAAAGGATGAAAAGCATCCTATTAGGATATATCTAAATTATGATGCTGTTGGCCACTCCCCTGACAGGGATTGTAAAAAAGTTGGTGACATTGTTAAGCTTGGGGATCCCCCAGTTACTTCTCTTCCTGGTTTGCCTTCTTGCAATCCTCTTTCTAATCATCCAACCCTCGGTGGTTGTTGGTATAACTGCACTTCTGAAGATATATCGAGAGATGATAAAAAGCACCTCCTTCGTAAGGCGTTAGGTCAGACAGCTGACTGGTTTAGGAGAGCATTGGCTGTTGAGCCTGTCAAGGGGAACTTGCGATTGAGTGGATATTCTGCATGTGGACAAGATGGAGGTGTGCAGCTTCCTCGGGAATATGTTGAAGAGGGAGTCTCTGATGCTGACTTAGTTCTTTTGGTGACTACAAGACCTACAACTGGGAATACACTTGCTTGGGCAGTGGCATGTGAACGAGATCAATGGGGTCGTGCTATAGCTGGACATGTTAATGTTGCTCCTCGTCATTTGACAGCTGAGGCGGAGACTTTGCTTTCAGCCACTCTGATACATGAGGTTATGCATGTTCTTGGTTTCGATCCTCATGCCTTTGTTCATTTTAGAGACGAAAGGAAAAGACGTCGTAATAAGGTTACTGAACAAGTTATGGATGAAAAGATTGGGCGAACAGTAACACGTGTGGTGCTTCCACGTGTTGTCATGCATTCACGACATCATTATGCGGCGTTCTCAGGAAATTTTACTGGTTTGGAGCTGGAAGATGGTGGAGGACGTGGCACATCAGGGTCTCATTGGGAAAAAAGGCTTCTGATGAATGAAATCATGACTGGTTCAGTGGATACAAGATCCGTAGTTTCAAACATGACACTAGCTCTCTTAGAAGATAGCGGGTGGTACAAAGCCAATTATAGCATGGCAGACCGTCTTGATTGGGGTCGCAACCAAGGTACTGAGTTTGTTACTTCCCCTTGCAATCTCTGGAAGGGAGCCTATCATTGCAACACCACACAGTTTTCGGGTTGTACATATAACAGAGAGGCAGAGGGTTACTGTCCCATTGTAACTTATAGCGGAGACCTTCCTCAGTGGGCTCGGTATTTTCCACAAGCTAATAAAGGTGGACAATCTGCATTAGCTGATTATTGTGCTTATTTTATTGCATACTCTGATGGATCATGTACAGACACAACCAATGCACGGGAACCTGATAGAGTGCTAGGCGAAGTCCGAGGAAGTAACTCTAGGTGTATGGCCTCATCATTAGTGCGCCCAGGATTTGTACGAGGTTCTACGACCAATGGAAATGGTTGTTATCAGCACAGGTGTATCAACTACACTTTAGAGGTTGCTGTGGATGGTATGTGGAGAGTGTGTCCTCAGGCTGGCGGGGCCATTCATTTCCCCGGCTTTAATGGTGAATTGATCTGCCCTGCATATCATGAGCTCTGTAACACGGACACGGTGGTTGACTCAGGGAAATGTCCCAGTGCATGTAATTTCAATGGAGATTGTGTTGATGGAAGGTGCCTCTGCTTTCTTGGGTTTCATGGTCACGATTGCAGTAGACGTTCCTGCCCCAGAAATTGCACTGGCAATGGCTTGTGTCTCAACAATGGAATATGTGAATGTAAACCTGGTTACACTGGCATCGACTGTTCCACCGCTGTTTGTGATGAGCAATGCAGCCTTAATGGTGGGGTTTGTGATAATGGAGTTTGCGAATTCCGCTGTTCTGACTATGGGGCATACAGTTGCCAGAACAGCTCAATGCTTCTCTCAACTCTTTCAGTTTGCAAAAATGTGCTAGGAAATGATATTTCTGGGCAGCATTGTGCACCCAAAGAACCTAGCATACTGCAGCAACTAGAAGAAGTGGTCGTCTTGCCCAACTACAACCACTTATTCCCCGTTGGTGCGAGGAAATTATTTAATATATTTGGCAGCTCCTACTGTGATGAGGCAGCTAAAAGGCTTGCTTGCTGGATCTCAATTCAGAAGTGTGACAAAGATGGAGACAACAGGCTACTAGTATGTCATTCTGCGTGTGAGTCTTACAATCTTGCGTGTGGAGTTTCACTGGACTGCAGTGAACAAACCCTTTTCAGCAGCAAAGAGGAGGGTGAGGGTAAATGTACTGGTTTTGGTGAGATGAAATTGTCATGGTTTAATCGATTGAGAAGAAGTTTTTCTTTGCAAAATAGTTCCTCAAAAGAAATACTTGTAAAAAATAGGCAACATTAG 2583 0.446 MDFVFLSFSSCMPFRFRFKLSLVIVVFQIVLILAWLEANNVTAQEQFQWGGLEGKVEKIDSHSCIHDHILEQRKRPGHKVYSVTPQVYEPGRSEPLQHKGRALLGISTSSKPQKDEKHPIRIYLNYDAVGHSPDRDCKKVGDIVKLGDPPVTSLPGLPSCNPLSNHPTLGGCWYNCTSEDISRDDKKHLLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPREYVEEGVSDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFVHFRDERKRRRNKVTEQVMDEKIGRTVTRVVLPRVVMHSRHHYAAFSGNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSNMTLALLEDSGWYKANYSMADRLDWGRNQGTEFVTSPCNLWKGAYHCNTTQFSGCTYNREAEGYCPIVTYSGDLPQWARYFPQANKGGQSALADYCAYFIAYSDGSCTDTTNAREPDRVLGEVRGSNSRCMASSLVRPGFVRGSTTNGNGCYQHRCINYTLEVAVDGMWRVCPQAGGAIHFPGFNGELICPAYHELCNTDTVVDSGKCPSACNFNGDCVDGRCLCFLGFHGHDCSRRSCPRNCTGNGLCLNNGICECKPGYTGIDCSTAVCDEQCSLNGGVCDNGVCEFRCSDYGAYSCQNSSMLLSTLSVCKNVLGNDISGQHCAPKEPSILQQLEEVVVLPNYNHLFPVGARKLFNIFGSSYCDEAAKRLACWISIQKCDKDGDNRLLVCHSACESYNLACGVSLDCSEQTLFSSKEEGEGKCTGFGEMKLSWFNRLRRSFSLQNSSSKEILVKNRQH 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00230 860 FunFam leishmanolysin-like peptidase isoform X2 314 438 - -
Trre1g00230 860 Gene3D Laminin 607 636 - -
Trre1g00230 860 Gene3D Laminin 638 669 - -
Trre1g00230 860 PRINTS Leishmanolysin (M8) metalloprotease family signature 248 277 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Trre1g00230 860 PRINTS Leishmanolysin (M8) metalloprotease family signature 401 430 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Trre1g00230 860 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 56 820 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Trre1g00230 860 FunFam leishmanolysin-like isoform X2 502 597 - -
Trre1g00230 860 ProSiteProfiles EGF-like domain profile. 635 667 IPR000742 -
Trre1g00230 860 SMART egf_5 638 667 IPR000742 -
Trre1g00230 860 SMART egf_5 607 635 IPR000742 -
Trre1g00230 860 Gene3D Leishmanolysin , domain 2 313 438 - -
Trre1g00230 860 Pfam Leishmanolysin 171 599 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Trre1g00230 860 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 114 601 - -
Trre1g00230 860 Gene3D Leishmanolysin domain 4 502 597 - -
Trre1g00230 860 FunFam Peptidase M8, leishmanolysin 113 303 - -
Trre1g00230 860 Pfam EGF-like domain 639 666 IPR013111 -
Trre1g00230 860 ProSitePatterns EGF-like domain signature 2. 655 666 IPR000742 -
Trre1g00230 860 Gene3D - 113 303 - -
Trre1g00230 860 ProSitePatterns EGF-like domain signature 1. 655 666 IPR000742 -
Trre1g00230 860 FunFam leishmanolysin-like peptidase isoform X2 441 500 - -
Trre1g00230 860 Gene3D Leishmanolysin domain 3 442 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00230 Trre-Chr1 1678303 1685459 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00230 1 1678303 1685459 Trre1g00230 1 1678303 1685459 ECH
Trre1g00230 1 1678303 1685459 Trre5g05560 5 56001420 56008573 PCT