Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00189 ATGGCTTCAAGTTCAGCTTGGACAACAAAGCAAAACAAAAGATTTGAGAATGCTTTGGCTATCTATGACAAGGATACACCGGATCGGTGGCAGAAGATTGCGAGGGCCGTCGGAGGGAAGACGGTTGAGGAAGTTAAAAGGCATTATGAGATGCTAGTTGAAGATTTGAAGCAAATTGAGGAAGGACATGTTCCATTACCTAAGTACAGGAATACTCCAACAACAATAGGAGGTAGCATTAAAGGTTACACTTACAATGATGAAGAACAAAGGTTGAAGTTTCTAAGCCTTCGTTGA 297 0.4141 MASSSAWTTKQNKRFENALAIYDKDTPDRWQKIARAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPKYRNTPTTIGGSIKGYTYNDEEQRLKFLSLR 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00189 98 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 74 IPR044636 GO:0003700
Trre1g00189 98 SMART sant 3 55 IPR001005 -
Trre1g00189 98 Gene3D - 1 66 - -
Trre1g00189 98 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Trre1g00189 98 SUPERFAMILY Homeodomain-like 7 60 IPR009057 -
Trre1g00189 98 FunFam Transcription factor SRM1 1 66 - -
Trre1g00189 98 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Trre1g00189 98 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Trre1g00189 98 CDD SANT 6 53 IPR001005 -
Trre1g00189 98 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00189 Trre-Chr1 1389324 1390074 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g00189 Myb_DNA-binding 3.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00189 1 1389324 1390074 Trre1g00189 1 1389324 1390074 ECH
Trre1g00189 1 1389324 1390074 Trre5g05582 5 56154400 56154821 PCT