Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00181 ATGAGTTGCAGAATTTTACTTTCGCTTCGTTCTTCAAGAACCGCAATCACAAAACTCAAATCAATCTCAAATTCCCAATTTTCCACCATTCTCTTCAATCGACTTCCCGTTTCATCAATCTCCGGTCACCGGAACCTCCATACGCATTCACCTGAACTCGGTAACTCGTTAATCGACCCGTCACTAAAAATTCACTTAAACGACAATGCCGTTCAACAAAACGACGATGAAGACGAAACCATGAATGAGTTTCTTTCAAGATTCGCTTGGATAATGAGGAAAAAAGTTAAGGAAGCGTATCCTGAATGTGATAAAAGCACTGTCGATGGAATGCTAGTTCTGATTGTTCAAAGAGTTGTTTCAGAAATGGAAAAAGGTGGTGGTGGTGAAAAAGCGGTGTTTGATTCGGTGGATTTTAGTGAGGATCTTTGGAAGACTGTGTGGGAGGTTAGTAATAAGGTTTTGGTTGATATGAATAAAGAGAGGAAGAAGGAGAAAATGAAGAGTTTTTTGCAGTGTGATGAGGTTAAAGAGATGTGTAGATTCGCCGGTGAGGTTGGTATTCGAGGCGATTTGCTTAGAGAGCTTAGGTTTAAATGGGCACGTGAGAAAATGGAGGAACATGAGTTTTATGAGGATTTGGAGAAATTGAGGAAAGAGGGACAGGTTATTGAAGAAGAAATAAAACATGAAAGTGACACTGAAACCGAAACAAATGTTGATGTTGGTGTTCATGTTGATGGTAATGTTGAGGAGAAGGGTGAGAATAAGGTTGTTGGGCTTCCTAAGAGGAAGGGGAAATTGAAGTTTAAGATTTATGGACTTGATCTATCTGATCCTAAATGGGAACAAGTGGCTGATAGGATTCATGAGGCAGGTGAAGTTCTTTGGCCGAAGGAGGCAAAGCCGATAACTGGGAAATGCAAACTAGTTACCGAGAAAATTCTGTCGTTGAAGGAGGAGGATGGAGATGATAGTTTGTTAACCCTTTTGGCTGAGTGGATAGAGCTTCTGCAGCCTGCTAGGGTGGATTGGTCCAATTTGCTTGAAAGATTGAAAAACCAGAATTCTCCTTTGTACTTCAAGGTGGCAGAAAGGGTATTGACTGAAGATTCTTTCCAAACAAACATATCTGACTACTCTAGGCTTATTGATATGTATGCCAAAGAGAACCGCATTGATGATACTGAGAGGATTCTTGAGAAGATGAATGAAAATGGTATACAACCAGATGCTTCGATAGCCGGTGTGTTGGTCCACATGTACAGCAAGATAGGTAATCTTGAACGTGCAGAAGAGGCATTTAAAATCTTGAGTAGCCATGGTTTCCAACCAGACTCAAAAGTCTACAACTCAATGATCATGGCCTACATAAATGCTGGTGAACCTACAAAGGGTGAGACGCTGATGAGGCAGATGGAGACAAGAGATATTAAGCCCACAAAGGAAATATACATGGCATTTCTCCGATATTATTCTCAACGTGGTGACTTTGATCGTGCCTCGCGAACTTCAACATCTCTGCAATTTGCAGGACACCCGCAGACTCTGGAAACATGCACCCTGCTTATTGAAGCAGCTGAAGTTGCAGATGACGTAGATAAGGTAAGCTCCAATTTTGACCACATGGTACAACTTGGGCATAAGCCTAATGATAGGTGCACTGCTGCCATGATTCGTGCTTATGAGAAGTCAAATTTATTGGACAAGGCATTGGATCTTCTTTTAACGTTAGAGAAAGATGGGTTTGAGCCTGGGGTTGCAACTTATTCTGTTCTTATGGAATGGATGGCTAAAATGCAGCTTCTCGATGAGACTGAACAGATTTTAAACAAAATTGCTTTGCTGGGTGAAGCTCCTCCTTTTAGGGTTCAAGTTAGTCTCTGTGATATGTATGCAAGGACTAAAATGGAGAAGAAGGCCCTTCAAACACTAGGTGTTCTGATAGCAAGGAAGGACGAATTACAAAAACATCAGTTTGAGAGGATTATAGCCGGCCTTATTAGTGGTGGGTTTTTGCGGGATGCACAAAGAATGCATGGGATCATGGAGGAACAGGGTTTCAAAGCATCTGGACAACTTATTTCAGCCCTTAAATCTGGCGACTTACTTCTAAGTATGAGGTAA 2127 0.4147 MSCRILLSLRSSRTAITKLKSISNSQFSTILFNRLPVSSISGHRNLHTHSPELGNSLIDPSLKIHLNDNAVQQNDDEDETMNEFLSRFAWIMRKKVKEAYPECDKSTVDGMLVLIVQRVVSEMEKGGGGEKAVFDSVDFSEDLWKTVWEVSNKVLVDMNKERKKEKMKSFLQCDEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEDLEKLRKEGQVIEEEIKHESDTETETNVDVGVHVDGNVEEKGENKVVGLPKRKGKLKFKIYGLDLSDPKWEQVADRIHEAGEVLWPKEAKPITGKCKLVTEKILSLKEEDGDDSLLTLLAEWIELLQPARVDWSNLLERLKNQNSPLYFKVAERVLTEDSFQTNISDYSRLIDMYAKENRIDDTERILEKMNENGIQPDASIAGVLVHMYSKIGNLERAEEAFKILSSHGFQPDSKVYNSMIMAYINAGEPTKGETLMRQMETRDIKPTKEIYMAFLRYYSQRGDFDRASRTSTSLQFAGHPQTLETCTLLIEAAEVADDVDKVSSNFDHMVQLGHKPNDRCTAAMIRAYEKSNLLDKALDLLLTLEKDGFEPGVATYSVLMEWMAKMQLLDETEQILNKIALLGEAPPFRVQVSLCDMYARTKMEKKALQTLGVLIARKDELQKHQFERIIAGLISGGFLRDAQRMHGIMEEQGFKASGQLISALKSGDLLLSMR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00181 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Trre1g00181 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Trre1g00181 708 Coils Coil 214 234 - -
Trre1g00181 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Trre1g00181 708 PANTHER OS07G0661900 PROTEIN 91 693 - -
Trre1g00181 708 Pfam Pentacotripeptide-repeat region of PRORP 388 500 IPR033443 -
Trre1g00181 708 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Trre1g00181 708 Gene3D Tetratricopeptide repeat domain 352 510 IPR011990 GO:0005515
Trre1g00181 708 Gene3D Tetratricopeptide repeat domain 511 663 IPR011990 GO:0005515
Trre1g00181 708 Coils Coil 386 406 - -
Trre1g00181 708 Pfam PPR repeat 557 583 IPR002885 -
Trre1g00181 708 NCBIfam pentatricopeptide repeat 449 481 IPR002885 -
Trre1g00181 708 NCBIfam pentatricopeptide repeat 380 412 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00181 Trre-Chr1 1358262 1360724 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00181 1 1358262 1360724 Trre1g00181 1 1358262 1360724 ECH