Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00178 ATGTCATTCAAGAGTATTGTGAGAGAGCTCAAGGAGATGAAAGAGGGAATTAGCAACATGTATAGAAGAAGTGTAGAAACCAAGCATATGCATAGACATGGAAAATCACACATAGCACCTGAATGTTCTTCACCAATATCACTTTCACCATCAGCACCACCAATAACAGAATCATCATCACATGGCCAATGGGCTAATTTACCTCCTGAGTTACTATTAGACATAATTCAAAGGGTGGAAGCTAGTGAAACCTCGTGGCCATCTTGTCGCGCACTTGTAGCTTGTGCCTCAGTTTGTAGATTGTGGAGAGAGATAACAAAGGGTATTGTTAAGACACTTGAACAGTGTGGGGTGTTTACTTTCCCTATATCATTGAAACAGCCTGGTCCAAGAGACAATCCGATTCAGTGTTTTATTAAGAGAGAAAGGGTTACTTCCACATATAGTTTATATCTTGGTTTGAGCCCTGCTCTTTCTGGTGATATGAGCAAACTGCTCTTAGCTGCAAAGAAGATTAGAAGAGCAACATGTACAGAATTTGTAATATCATTGGTTGCTGATGATTTCTCTAAAACTAACAATACTTACATTGGAAAGCTAAGGTCTAATTTTCTCGGCACCAAGTTCATGATCTTCGACGGCCATCCTCCACATGATTCTTCACTTCCATTGAGCTGTATGGTGCAGAAAAGGATCCATCAGAAGCAGGTACTTCCAAAGGCTGCTCCTGCTACTGCTAACTATAAAGTAGCAACGGTATCTTATCAACTCAATGTTCTTCGTACAAGAGGTCCGAGGCGAATGCAGAGTACAATGCACTTAATTCCTATATCCTCAGTCAAAGAAGGAGGAACTGCTCCTACTCCTTTGGAATTTACCAATTACCATGATGAGCATGAATCTTCAAAAGGAAAGAAGCCAGAAGTTGTTGAGTTTGGCTCAACTTGCACCGATTTTGCAAGAGAACCGCTGATTTTGAAAAATAAAGCTCCTAGATGGCATGAACAACTACAATGTTGGTGCTTGAATTTCAAAGGACGGGTTACGGTGGCTTCAGTGAAGAATTTTCAGCTTGTAGCAGCTGCTGAACCTTGCCAAAACGTACCGGCTGCAGAACAAGAGAAAGTTATACTGCAATTTGGAAAAATTGGGAAGGACATATTCACTATGGATTATCGATATCCTCTCTCCGCTTTTCATGCCTTTGCAATCTGTTTGAGTAGCTTTGACACAAAACCAGCTTGTGAATGA 1251 0.4085 MSFKSIVRELKEMKEGISNMYRRSVETKHMHRHGKSHIAPECSSPISLSPSAPPITESSSHGQWANLPPELLLDIIQRVEASETSWPSCRALVACASVCRLWREITKGIVKTLEQCGVFTFPISLKQPGPRDNPIQCFIKRERVTSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFVISLVADDFSKTNNTYIGKLRSNFLGTKFMIFDGHPPHDSSLPLSCMVQKRIHQKQVLPKAAPATANYKVATVSYQLNVLRTRGPRRMQSTMHLIPISSVKEGGTAPTPLEFTNYHDEHESSKGKKPEVVEFGSTCTDFAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFHAFAICLSSFDTKPACE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00178 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Trre1g00178 416 Gene3D - 57 109 - -
Trre1g00178 416 CDD F-box_AtTLP-like 64 107 - -
Trre1g00178 416 PRINTS Tubby superfamily signature 196 220 IPR000007 -
Trre1g00178 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Trre1g00178 416 PRINTS Tubby superfamily signature 247 274 IPR000007 -
Trre1g00178 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Trre1g00178 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Trre1g00178 416 PRINTS Tubby superfamily signature 180 196 IPR000007 -
Trre1g00178 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Trre1g00178 416 SUPERFAMILY F-box domain 49 106 IPR036047 GO:0005515
Trre1g00178 416 SUPERFAMILY Tubby C-terminal domain-like 114 416 IPR025659 -
Trre1g00178 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Trre1g00178 416 Pfam Tub family 125 411 IPR000007 -
Trre1g00178 416 Gene3D Tubby Protein; Chain A 121 416 IPR025659 -
Trre1g00178 416 PANTHER TUBBY-RELATED 52 414 - -
Trre1g00178 416 Pfam F-box domain 64 111 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00178 Trre-Chr1 1346414 1348041 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre1g00178 Tub 5e-102 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00178 1 1346414 1348041 Trre1g00178 1 1346414 1348041 ECH