Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00163 ATGTCAGGTCCTCTTGATCGCTTCGCTCGTCCATGTTTTGAAGGTTTTTCTGGTCATCATCATGATGAAAGAAGAGAGAGAAAATCAGATTTTGAGAATTCGGAAGATGATCGGCGAACAAGAATTGGGAGTTTGAAAAAGAAAGCGATAAATGCTTCGAGTAAATTTAGGCATTCTCTTAGGAAGAAAAGCCGGAGAAAGAATGCCAGTCGGAGTAATTCGCTTGCAATTGAGGATGTTCGAGATGTTAAGGAGTTACAAGCAGTGGATGCTTTTCGACATTCACTTATTTCAGATAGTTTATTGCCATCAAGACTTGATGACTATCATATGTTATTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAAGCAAAGCAGATGTGGGCCAACATGATCCAATGGAGGAAAGAGTATGGTACCGATACAATTATGGAGGATTTTGAGTTCAGTGAGTTGGACGAAGTCATGCAATACTATCCACATGGTTATCATGGTGTTGATAAGGAAGGAAGACCTATTTATATTGAGAGACTAGGTAAAGTTGATCCCAATAAGCTTATGCAAGTAACTACCATGGAAAGGTATTTAAAATACCATGTACAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCTTGTTCTATTGCTGCAAAGAGACATATAGATTCCAGTACAACCATTTTGGATGTTCATGGTGTGGGTTTCAAAAACTTCACAAAGACTGCACGAGAACTAATCATGCGGCTGCAGAAAATTGATGGTGACTACTATCCCGAAACACTATGCCGAATGTTTATAATCAATGCTGGTCCTGGTTTCAAGCTGCTTTGGAACACAGTGAAAACATTCATTGATCCCAAAACTAGTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAATAAGTTGTTTGAAATTATTGATGCCAGTGAGCTGCCAGAATTTCTTGGTGGTAGTTGTACTTGTATAGATCAAGGAGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGATCCAAACATTTTAAAGATGGTTCTCAATGGTGAAATACAATGTCCTAGACAAATAGTAACGATTTCTAATGATGAGGGGACAGTGATTCAATGTGATAAGGCATCTTATCCAATGATAAGAAGTAGTGATACATCAACAGGAGAATCAGGGTCTGAAGTTGAAGATATCACTTCCCCCAAAGCAAGTGGGAATTATACAAACCCTAGGTTGACTCCTGTCCATGAAGAAGCAAGGTTGGCTGGTCGGGCTGGTCTTTCTGTCGGTTTCCCTGAGTATGATGAGTACGTTCCCATGGTTGACAAGACTGTCGATGTTGCATGGAAGGAGAAACAAGTGACAACTCAAAACTCATATAGCGCAACAGAAAAATATCTATTGAGGACTGGAGGATCAGATGGAAACCGTGCATATATATGGGCTATTATCATTGGCTTCTTTGCTGCAATTTTTACTTTTGCTCGTTCAATAGCATTTCATACGACTAAGGGAATAAAGGACAATGACTCTGACTGTGTCCAACCAACAACCAAGGAAGAATCTCGTCCCCAATCACCTGCTCCCACATCAACAAAGGAAGAACTTGTCCCGTCTGCTTTGAAACGCCTTTGTGAGCTTGAAGAGAAGGTTGAAATGCTGCAGTCAAAACCTAATGTAATGCCATGTGAGAAAGAGGAACTGCTGAATGCTGCTGTTTATCGAGTGGATGCCTTGGAAGCTGAATTGATCACTACAAAGAAGGCTTTATACGAAGCTTTGATTAGACAAGAAGAACTTATGGCATACATAGATAATCAGGAAAGAAGAAAATTCGAGAAAAGGAAGTTTTGCTCATTTTGA 1860 0.3968 MSGPLDRFARPCFEGFSGHHHDERRERKSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSRRKNASRSNSLAIEDVRDVKELQAVDAFRHSLISDSLLPSRLDDYHMLLRFLKARKFDIEKAKQMWANMIQWRKEYGTDTIMEDFEFSELDEVMQYYPHGYHGVDKEGRPIYIERLGKVDPNKLMQVTTMERYLKYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNFTKTARELIMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFIDPKTSSKINVLGNKFQNKLFEIIDASELPEFLGGSCTCIDQGGCMRSDKGPWQDPNILKMVLNGEIQCPRQIVTISNDEGTVIQCDKASYPMIRSSDTSTGESGSEVEDITSPKASGNYTNPRLTPVHEEARLAGRAGLSVGFPEYDEYVPMVDKTVDVAWKEKQVTTQNSYSATEKYLLRTGGSDGNRAYIWAIIIGFFAAIFTFARSIAFHTTKGIKDNDSDCVQPTTKEESRPQSPAPTSTKEELVPSALKRLCELEEKVEMLQSKPNVMPCEKEELLNAAVYRVDALEAELITTKKALYEALIRQEELMAYIDNQERRKFEKRKFCSF 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00163 619 SUPERFAMILY CRAL/TRIO domain 153 347 IPR036865 -
Trre1g00163 619 CDD SEC14 154 321 IPR001251 -
Trre1g00163 619 Gene3D - 32 140 - -
Trre1g00163 619 MobiDBLite consensus disorder prediction 13 44 - -
Trre1g00163 619 Gene3D - 141 352 IPR036865 -
Trre1g00163 619 Pfam CRAL/TRIO, N-terminal domain 110 132 IPR011074 -
Trre1g00163 619 PRINTS Cellular retinaldehyde-binding protein signature 111 133 - -
Trre1g00163 619 PRINTS Cellular retinaldehyde-binding protein signature 280 299 - -
Trre1g00163 619 MobiDBLite consensus disorder prediction 1 73 - -
Trre1g00163 619 SUPERFAMILY CRAL/TRIO N-terminal domain 84 149 IPR036273 -
Trre1g00163 619 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 153 327 IPR001251 -
Trre1g00163 619 MobiDBLite consensus disorder prediction 381 410 - -
Trre1g00163 619 MobiDBLite consensus disorder prediction 517 532 - -
Trre1g00163 619 SMART CRAL_TRIO_N_2 108 133 IPR011074 -
Trre1g00163 619 Pfam CRAL/TRIO domain 159 321 IPR001251 -
Trre1g00163 619 MobiDBLite consensus disorder prediction 508 533 - -
Trre1g00163 619 FunFam SEC14 cytosolic factor 141 353 - -
Trre1g00163 619 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 26 606 - -
Trre1g00163 619 MobiDBLite consensus disorder prediction 51 69 - -
Trre1g00163 619 SMART sec14_4 153 324 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00163 Trre-Chr1 1251567 1256689 Tandem