Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00162 ATGGGTTCTCTGCAAGGACAAGTTATGTGTCCCTCTGTTCATCCTAAAGTTGCAGGGTTCTGTAGTCTTCCTATGATTGGGCCAATGAATGTTAGTTGTGTTAGAACTGAATTTTGGGGACTCAAGGAACTTAGTGGCAGCGGCAAGACTAAGACGAGTTTCCTTTCTTGGCACATAAACACGCGAAAAAGCAATACAATAGTGCATTGTAGTTTAAATCCGTCCTCGAATGATGGCGGAAGTACGGCAGAAAATTTCAATGAAAAAGATGAAGATTATGTTAATTCAAGTGTGATTGAAGCTGTTGAGGTGAAGAGTGGAGCAGATGGTTTCATAATCAAAATGAGGGATGGAAAACACTTGAGGTGCGTCCAAAACAATCCTCAGAGAGGCCATCTACCAGATTATTCGCCACATCCCGCAATGGTTTTGAAGATGGAAGATGGTCTACTTCTCCCTATAATTGTTTTGGAGATGCCAAGTGTCTTACTAATGGCAGCAGTACGCAATGTTCCAATTGCCAGGCCTACTGTATATGAAGCAGTGATGGAAATGGTTGATAAAATGGGTTACCAAGTTGGAAAAGAGGCAGAATGTAAGAGCTTTGACCTTCGACCTTCAGATGCTATCAATATTGCAGTTAGATGCAAGGTGCCAATACAAGTCAACAAGAATTTGGTGCACAGTGATGGAATGAGAGTAATTGACTCAGGCAAAGTGTCAATACAGTTCCCTGGTTTTGATGACCGGTTATTGACAGAAATGGACAAACCAAATGGTCAACCTTGCGCTGAAACCGATGAATTCAATCTTTTGAACAACATGTTGAAAGCTGTTGTTGAAGAGCGTTATAATGATGCCGGTTTTGAAGGTTTTTCTGGTCATCATCATGATGAAAGAAGAGAGAGAAAATCAGATTTTGAGAATTCGGAAGATGATCGGCGAACAAGAATTGGGAGTTTGAAAAAGAAAGCGATAAATGCTTCGAGTAAATTTAGGCATTCTCTTAGGAAGAAAAGCCGGAGAAAGAATGCCAGTCGGAGTAATTCGCTTGCAATTGAGGATGTTCGAGATGTTAAGGAGTTACAAGCAGTGGATGCTTTTCGACATTCACTTATTTCAGATAGTTTATTGCCATCAAGACTTGATGACTATCATATGTTATTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAAGCAAAGCAGATGTGGGCCAACATGATCCAATGGAGGAAAGAGTATGGTACCGATACAATTATGGAGGATTTTGAGTTCAGTGAGTTGGACGAAGTCATGCAATACTATCCACATGGTTATCATGGTGTTGATAAGGAAGGAAGACCTATTTATATTGAGAGACTAGGTAAAGTTGATCCCAATAAGCTTATGCAAGTAACTACCATGGAAAGGTATTTAAAATACCATGTACAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCTTGTTCTATTGCTGCAAAGAGACATATAGATTCCAGTACAACCATTTTGGATGTTCATGGTGTGGGTTTCAAAAACTTCACAAAGACTGCACGAGAACTAATCATGCGGCTGCAGAAAATTGATGGTGACTACTATCCCGAAACACTATGCCGAATGTTTATAATCAATGCTGGTCCTGGTTTCAAGCTGCTTTGGAACACAGTGAAAACATTCATTGATCCCAAAACTAGTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAATAAGTTGTTTGAAATTATTGATGCCAGTGAGCTGCCAGAATTTCTTGGTGGTAGTTGTACTTGTATAGATCAAGGAGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGATCCAAACATTTTAAAGATGGTTCTCAATGGTGAAATACAATGTCCTAGACAAATAGTAACGATTTCTAATGATGAGGGGACAGTGATTCAATGTGATAAGGCATCTTATCCAATGATAAGAAGTAGTGATACATCAACAGGAGAATCAGGGTCTGAAGTTGAAGATATCACTTCCCCCAAAGCAAGTGGGAATTATACAAACCCTAGGTTGACTCCTGTCCATGAAGAAGCAAGGTTGGCTGGTCGGGCTGGTCTTTCTGTCGGTTTCCCTGAGTATGATGAGTACGTTCCCATGGTTGACAAGACTGTCGATGTTGCATGGAAGGAGAAACAAGTGACAACTCAAAACTCATATAGCGCAACAGAAAAATATCTATTGAGGACTGGAGGATCAGATGGAAACCGTGCATATATATGGGCTATTATCATTGGCTTCTTTGCTGCAATTTTTACTTTTGCTCGTTCAATAGCATTTCATACGACTAAGGGAATAAAGGACAATGACTCTGACTGTGTCCAACCAACAACCAAGGAAGAATCTCGTCCCCAATCACCTGCTCCCACATCAACAAAGGAAGAACTTGTCCCGTCTGCTTTGAAACGCCTTTGTGAGCTTGAAGAGAAGGTTGAAATGCTGCAGTCAAAACCTAATGTAATGCCATGTGAGAAAGAGGAACTGCTGAATGCTGCTGTTTATCGAGTGGATGCCTTGGAAGCTGAATTGATCACTACAAAGAAGGCTTTATACGAAGCTTTGATTAGACAAGAAGAACTTATGGCATACATAGATAATCAGGAAAGAAGAAAATTCGAGAAAAGGAAGTTTTGCTCATTTTGA 2688 0.401 MGSLQGQVMCPSVHPKVAGFCSLPMIGPMNVSCVRTEFWGLKELSGSGKTKTSFLSWHINTRKSNTIVHCSLNPSSNDGGSTAENFNEKDEDYVNSSVIEAVEVKSGADGFIIKMRDGKHLRCVQNNPQRGHLPDYSPHPAMVLKMEDGLLLPIIVLEMPSVLLMAAVRNVPIARPTVYEAVMEMVDKMGYQVGKEAECKSFDLRPSDAINIAVRCKVPIQVNKNLVHSDGMRVIDSGKVSIQFPGFDDRLLTEMDKPNGQPCAETDEFNLLNNMLKAVVEERYNDAGFEGFSGHHHDERRERKSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSRRKNASRSNSLAIEDVRDVKELQAVDAFRHSLISDSLLPSRLDDYHMLLRFLKARKFDIEKAKQMWANMIQWRKEYGTDTIMEDFEFSELDEVMQYYPHGYHGVDKEGRPIYIERLGKVDPNKLMQVTTMERYLKYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNFTKTARELIMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFIDPKTSSKINVLGNKFQNKLFEIIDASELPEFLGGSCTCIDQGGCMRSDKGPWQDPNILKMVLNGEIQCPRQIVTISNDEGTVIQCDKASYPMIRSSDTSTGESGSEVEDITSPKASGNYTNPRLTPVHEEARLAGRAGLSVGFPEYDEYVPMVDKTVDVAWKEKQVTTQNSYSATEKYLLRTGGSDGNRAYIWAIIIGFFAAIFTFARSIAFHTTKGIKDNDSDCVQPTTKEESRPQSPAPTSTKEELVPSALKRLCELEEKVEMLQSKPNVMPCEKEELLNAAVYRVDALEAELITTKKALYEALIRQEELMAYIDNQERRKFEKRKFCSF 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00162 895 SMART CRAL_TRIO_N_2 384 409 IPR011074 -
Trre1g00162 895 MobiDBLite consensus disorder prediction 657 686 - -
Trre1g00162 895 SUPERFAMILY CRAL/TRIO domain 429 623 IPR036865 -
Trre1g00162 895 Gene3D - 308 416 - -
Trre1g00162 895 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 302 882 - -
Trre1g00162 895 MobiDBLite consensus disorder prediction 290 314 - -
Trre1g00162 895 SUPERFAMILY Hypothetical protein TM0160 123 237 IPR036104 GO:0004518
Trre1g00162 895 CDD SEC14 430 597 IPR001251 -
Trre1g00162 895 PRINTS Cellular retinaldehyde-binding protein signature 556 575 - -
Trre1g00162 895 PRINTS Cellular retinaldehyde-binding protein signature 387 409 - -
Trre1g00162 895 SMART sec14_4 429 600 IPR001251 -
Trre1g00162 895 Gene3D Bifunctional nuclease domain 192 239 IPR036104 GO:0004518
Trre1g00162 895 MobiDBLite consensus disorder prediction 784 809 - -
Trre1g00162 895 Pfam CRAL/TRIO, N-terminal domain 386 408 IPR011074 -
Trre1g00162 895 MobiDBLite consensus disorder prediction 793 808 - -
Trre1g00162 895 SUPERFAMILY CRAL/TRIO N-terminal domain 360 425 IPR036273 -
Trre1g00162 895 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 429 603 IPR001251 -
Trre1g00162 895 FunFam SEC14 cytosolic factor 417 629 - -
Trre1g00162 895 Gene3D - 417 628 IPR036865 -
Trre1g00162 895 Pfam CRAL/TRIO domain 435 597 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00162 Trre-Chr1 1246037 1256689 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00162 1 1246037 1256689 Trre1g00162 1 1246037 1256689 ECH