Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00150 ATGAAAACATGCGCATGCTTTAACGGTTCAATCATTCTTCACTCTTTCAATTCAATTCAATTTCAACAACAACGCTATCTTCATCACTATCTAAACCTTCCTTCATTCTCTATTCGCTCTCTTAAAGCTATACCTCGCAACATTGAAGCTGAACTCTCTTCTTCCAACGACGCCGTTTTACCTCTGAACCAAAACTCTCCGATTCAGTTTCAACCACCGCCACAAAACGAAGAAGCGCCGCTACCTCCAACTTCGGTTGTTCTCTCCGATGAAGATAAAGTCACTACTAAGCTTAAAAAGAAGAAAGAACAAAACGACGATAATAGTAGTAGAAACTTCGATGACCGATTCAAGCTCCGTAATGGAAAAGAGGTTTTTGAAGAGAAAGCTTATCTAGTTGGTGTTGAGCGAAAAGGTGAAGCTAGTGATTCTTTTGGTATAGAAGATTCTTTGAGTGAACTCGAACAGTTAGCTGATACTGCTGGGTTATTGGTTGTTGCTTCTACTTATCAGAAGCTTGCTTCTCCAAACCCTAGGACGTACATTGGCTCCGGCAAAGTTTCTGAAATTAAGAGTGCAATTAATGCATTGGACGTTGAAACTGTGATATTTGATGATGAACTATCAGCTGGGCAACTGCGCAACCTGGAAAAAGTTTTTGGTGGAAATGTGAGAGTTTGCGATCGAACTGCTCTCATCCTTGATATATTTAATCAGCGAGCAGCAACACATGAAGCATCTTTACAGGTTGCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGAGGACAGGTGAAGGGAATGGGTGAAAAACAAAAAGAAGTGGACAAGCGTATTTTGCGTGACCAAATTAGTGTTCTTAAAAAAGAGCTAGAAACTGTTAGGAAACATCGAAAGCAGTACCATACTAGGCGTGTCTCAGTACCCGTGCCAGTGGTATCCTTGGTGGGTTACACGAACGCTGGTAAGAGTACGCTTTTGAATCAATTAACTGGAGCAGATGTTCTTGCCGAGGATAAATTGTTTGCAACTTTAGATCCAACTACAAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTGCCTACTACACTAGTTGCTGCCTTCAGAGCCACACTGGAGGAGATATCAGAGTCATCACTTTTGGTTCATGTGATTGATATCAGTCACCCCTTGGCCGAGCAACAGATAAATGCTGTGGACAAAGTCCTGTCAGAACTAGATGTATCATCAATTCCAAGATTGATTGTCTGGAACAAGATTGATAAGGCTAGTGATCCCCAGAAAATCAGGCTAGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCTGCTTTAAGTGGTGATGGCGTACAAGAATTCTGTAATGCAGTTCAAGAAAAACTAAAGGACTCTATGGTATGGGTGGAAGCTTTGTTACCATTCGAAAATGGGGACCTTCTCAGCACCATTCACCAGGTTGGAATGGTTGAGAAAACTGAATATACTGAGCAAGGGACATATATCAAGGCTCATGTACCCCTACGTTTTGCGAGATTGCTTACACCTATGAGGCAACTGTGTGTACCACGATCTTAA 1650 0.4145 MKTCACFNGSIILHSFNSIQFQQQRYLHHYLNLPSFSIRSLKAIPRNIEAELSSSNDAVLPLNQNSPIQFQPPPQNEEAPLPPTSVVLSDEDKVTTKLKKKKEQNDDNSSRNFDDRFKLRNGKEVFEEKAYLVGVERKGEASDSFGIEDSLSELEQLADTAGLLVVASTYQKLASPNPRTYIGSGKVSEIKSAINALDVETVIFDDELSAGQLRNLEKVFGGNVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQSGGGQVKGMGEKQKEVDKRILRDQISVLKKELETVRKHRKQYHTRRVSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVIDISHPLAEQQINAVDKVLSELDVSSIPRLIVWNKIDKASDPQKIRLEAEKRDDVVCISALSGDGVQEFCNAVQEKLKDSMVWVEALLPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARLLTPMRQLCVPRS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00150 549 FunFam GTPase HflX 323 492 - -
Trre1g00150 549 Coils Coil 290 310 - -
Trre1g00150 549 Hamap GTPase HflX [hflX]. 151 515 IPR016496 GO:0005525
Trre1g00150 549 PRINTS GTP1/OBG GTP-binding protein family signature 393 411 IPR006073 GO:0005525
Trre1g00150 549 PRINTS GTP1/OBG GTP-binding protein family signature 326 346 IPR006073 GO:0005525
Trre1g00150 549 Pfam GTP-binding GTPase Middle Region 240 318 IPR032305 -
Trre1g00150 549 Gene3D - 241 309 - -
Trre1g00150 549 Gene3D - 141 240 IPR042108 -
Trre1g00150 549 Pfam 50S ribosome-binding GTPase 326 444 IPR006073 GO:0005525
Trre1g00150 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 497 IPR027417 -
Trre1g00150 549 MobiDBLite consensus disorder prediction 63 85 - -
Trre1g00150 549 NCBIfam GTPase HflX 130 486 IPR016496 GO:0005525
Trre1g00150 549 Gene3D - 323 491 IPR027417 -
Trre1g00150 549 Pfam GTP-binding GTPase N-terminal 148 237 IPR025121 -
Trre1g00150 549 Pfam HflX C-terminal domain 456 524 IPR045498 -
Trre1g00150 549 CDD HflX 283 486 IPR030394 GO:0005525
Trre1g00150 549 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 324 490 IPR030394 GO:0005525
Trre1g00150 549 PANTHER GTP-BINDING PROTEIN HFLX 80 533 IPR016496 GO:0005525
Trre1g00150 549 FunFam Predicted protein 142 264 - -
Trre1g00150 549 NCBIfam small GTP-binding protein domain 325 481 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00150 Trre-Chr1 1169379 1175184 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00150 1 1169379 1175184 Trre1g00150 1 1169379 1175184 ECH