Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00147 ATGTATCCAAACCAAGCATTTTCTTCGGGATCTTATGCCGAGATGATTTCCGGGAATACTTTGTTACCTCATAACTATAGTGAATCTGTTGGAGGGCAAAATGAGTTGAAGTTTATGACATCTATGAACGACACAATGAATATGCAGCATATCGATGAGGGTCATTCTAATGATGCTTCGAGCGATCCAAGGACACAATTTGGACTCGTTGAGAGCGAGCAAAATGTGCAATGTCAAGGCTTGTCTCTTAGCCTTGGGACAATGATGCCTTCGTTTCAGTATCAGTATCCCGGCAACAGTTTCACCTCGCTAATGAATGCTCAAATTTCAAACTTAAAGGAGTCTGCATCTTTTAAAGATGACGAGGAATTGAGAAATGCCGAGTGCATTGCATCTTTGTCTTCTGGAGGATTTCACAACACTGTCAAAAGGGAGGGTTTGTATAATCCACAACACCACTCAATAGGCCTTAATGAAGGCCAATCTGATCCGTGTCTGCACGGATCAGCGGTTATTCCAAACAATTCCCTTAACTCACATTACCTTAAGGCAGCGCAGGAATTGCTTGATGAAATAGTTAATGTCCGAAAGGGTTTGAAACAAACTGGATCGGAAAAACAACAAAGTGTCCGCGATGCTGGTTTAGATGGTTCCAAAGATTCTGATGGAAAATCTACAAGCCAATCTATGCAAATATCTCCGGGTCCTAATGGTTCTAATGCAAACAACCCTTCATGTGAGCTATCACCTGCCGAACGACAGCATTTGTTGGACAAGAAAACAAAACTTTTGGCCATGTTGGATGAGGTAGACAAAAGATACCGACAATACTGTCACCAGATGCAGATTGTGGTATCATCTTTTGACATGGTTGCTGGTTGTGGAGCTGCTGAACCATACACAGCTCTTGCTTTGCGCACAATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATTAGCGGCCAAATTCAAGTGACTCAAAGGAGCCTAGGAGAACAAGAGGGAATACCTCGTCTCCGCTACGTGGATCAACAGCTTAGACAACAAAAAGCCCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGACCTCAGAGGGGACTTCCCGAAAGCTCTGTTTCAATACTCCGTGCATGGCTCTTCGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGTTGGCAAGACAAACTGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATTAATGCGAGGGTGCGTCTTTGGAAACCAATGGTCGAAGAAATGTACAAAGAAGAGTTTGGTGATTCGGAGACAAGCAGCAATCTTTTATCAGAAAACACACTGAAAGCTCCGAGAGACGATGATGTTCGAGTGTGGGATGATAAAAGGGAAGAATCACAGGACAAGTTAACAACTATTGATACTGTTCAACAAGGTCAAATTGCAGGATTGAAGTTGGATCATGCATCCTCCTCCACCATGGCCGCAACAGAATTGGATAGAGGGATTCAAAGTAACGATCATTGGACAAATATGATGGATTCTAGAATTGGGAAAATGCAGGGTGACCAACAAAGGTTTAACATGAACAATAGTCCTTATTCAAATGCACCGATCTCAATCAACCAAAATGGCGATGGTTGCATAATGGATTCTACTCCTACTACTTATGATGATTTATCAGAGTTGAGTAACTTTGGTGTTGGTGGCCATGTCTCACTTGCATTAGAGTTGAGGAACTCTGAAAGTGATGGATTTGGTTTGCCGAATGACGACATCAATAAAAGGCGTAACCAAACATTGGCTTCTTCATCAGATACCGATTTGTTAGATTATCATTTTACAGACAATGGAAAGCAACAGCACAAGTTTGGCAACCCTCATTTATTACATGAGTTTGTTGTCTGA 1905 0.4226 MYPNQAFSSGSYAEMISGNTLLPHNYSESVGGQNELKFMTSMNDTMNMQHIDEGHSNDASSDPRTQFGLVESEQNVQCQGLSLSLGTMMPSFQYQYPGNSFTSLMNAQISNLKESASFKDDEELRNAECIASLSSGGFHNTVKREGLYNPQHHSIGLNEGQSDPCLHGSAVIPNNSLNSHYLKAAQELLDEIVNVRKGLKQTGSEKQQSVRDAGLDGSKDSDGKSTSQSMQISPGPNGSNANNPSCELSPAERQHLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENTLKAPRDDDVRVWDDKREESQDKLTTIDTVQQGQIAGLKLDHASSSTMAATELDRGIQSNDHWTNMMDSRIGKMQGDQQRFNMNNSPYSNAPISINQNGDGCIMDSTPTTYDDLSELSNFGVGGHVSLALELRNSESDGFGLPNDDINKRRNQTLASSSDTDLLDYHFTDNGKQQHKFGNPHLLHEFVV 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00147 634 CDD homeodomain 362 423 IPR001356 GO:0003677
Trre1g00147 634 SMART prehox3 166 321 IPR006563 -
Trre1g00147 634 SMART HOX_1 362 426 IPR001356 GO:0003677
Trre1g00147 634 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
Trre1g00147 634 Pfam Associated with HOX 178 320 IPR006563 -
Trre1g00147 634 MobiDBLite consensus disorder prediction 200 248 - -
Trre1g00147 634 Coils Coil 182 202 - -
Trre1g00147 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 443 - -
Trre1g00147 634 Gene3D - 359 437 - -
Trre1g00147 634 ProSiteProfiles 'Homeobox' domain profile. 359 422 IPR001356 GO:0003677
Trre1g00147 634 SUPERFAMILY Homeodomain-like 363 429 IPR009057 -
Trre1g00147 634 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00147 Trre-Chr1 1145877 1148464 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre1g00147 POX 1.2e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00147 1 1145877 1148464 Trre1g00147 1 1145877 1148464 ECH
Trre1g00147 1 1145877 1148464 Trre5g05622 5 56370110 56372156 PCT
Trre5g05623 5 56378474 56380642 Trre1g00147 1 1145877 1148464 PCT