Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00124 ATGGAAGATTTGAGGTCAGGGACGAAGAAGAAGAAGAAGAGATCTAAACCGATTGAAATTGGTTTTGATTCTGATAACGATGAACCAATTGGTTCTTTGTTTAAGTTTAAGAAGAATAAGAAAGGTGAGAATTCTAGGGTTCTTGATGATAATGATACTTTGGCTAGTTTTAGGAAGAGGTTGAAGGGTCCAAAGAGAGATCATGGATCTGAAACTGTGTCTGCTTTGAATGTTTCTGTTGAGGGTTGTGATGATGATGGTTTGGTTGAAGGGGGATCTGGGAGGAGCGCGGAAAAGGATGAGAATGGGGTGGATTTGTTGGTTAGTGATGATGACATGCAGGTGCATCATTCTTCTGATCAGCATATGGAAGAATCATTGTCTATGATTTTTAATAAGTCACAATCTAGTTCTGTTAAGAAATCTAGGGCTGGGTTAGGTTCAAAGAAGAAACGAGGGAATCGGAATGTGGATAGTGGGTTGGAACATGGATGCAAAAGTTTAACAGAAAATATTGATTATGCGATTGAAAGTAGATCTAGATCTGCTTCTGCTTTGCAATATGTTGAGAGGAATCATGAGTCTGGTACATTTTGTTCAGTATCTGCAATGGATGATCAAAACAGTGGTGATGACTGTTTTCAAGAGAAAAAAGCGAAGGGTATTTGTGATTCAAACAATCCAGATGGGTCGGCGGTTGATCACTCTAAACGAATCATTGACTGCGTTGGAGATAGGCAGCAATTGTCAAGTGTACAAGTTGAAGATGTTTGTGGTGCCTCTGATGAAAAGGCGGCATTGCAAGAAAGAATTCTCGATAATAGTTTGAATCAGTGTTCTGCCATGTTACAAGATGTTGAAATAATTGATACTGCCTCTCCTTCTAAACTGGGGGAAGGGGTATGTGGATTTTCTGAGACTGGAGAGCTTGGGAATAGGTTAAATGATGAAATAGCAGAAAAACAGGTGCGTATTGGTGCTTCAGAAGGAGGTGTTTCTACTTCCTATCACACCGAGCTCTTGATCAAATCAAATGAAAATATATTGAATGAGAATAATGCCATGGTTTGTGGAATTTTTTTCCAGGAATCCTCTATCAATGGAGGTATAAAATTGGAAGCCGAGTTTGTTTCTGGTCGAAATTGTTATGATTACAGTGCATCAGATACAAATGCTGAAGTACAAGATGTTGTTGTAGGCTGTTCACCTGAAAAACATGATGCAATTGCCAGTGGTAGTTTATCCTCTATTGCCCCTAACGGCGCCGATGAATCTGAATTGATTGTCCAGTCGAATCACCCGGACAAACCTTTGGAAACGTGTAATGTTCCAAAATACTCTTCTGTTTCAATTCTGAAATGCAGCTCTGTGTTAGATCCAACTCAATCTGATGGATCCTCTATACAATCTTCAGTTCCAGATGAAAACGGAAACATTGCAGAATATCATGCCTGTGTGTCTGATTTTGCTGACAATGGTGGTAAGATATCAGGCATTCCTCGTGCACCACGAAAGACCAAAATGCATAAGCATGGCGACATGACTTATGAGGGGGATGCTGATTGGGAGATTTTAATAAACGACAAATCCCTAAATGAAAGCCAAGATGCTGTTGATGGTGACCGTACTCTTAGAACAAGAGGGAAGCAGGACTCCTCTTTGAATGCTGTTGAGGACTCTGAAAATGTTGCAGTAGCGGCAGTATCTGCTGGGCTGAAAGCTGCTGCAGTTGGTCCAATTGAGAAAATAAAATTTAAGGAGATCTTGAAGCGAAAAGGTGGTCTCAAGGAATATTTAGATTGCAGGAATCAGATCTTAAGCCTATGGAGCAGTGATGTTGCACGTATTTTGCCTCTTGCTGAATGTGGAGTTAGCGATATCCGTTCCGAGAATGAAAGTCCTCGTACTTCTCTTATTAGGGAGGTCTATGCATTTCTTGATCAATATGGTTATATAAATGTTGGAGTTGCCTCTCAAAAGGAGAATGTTGAGAGCAGCGCAAGACATTGTTATAAGCTTGTAAAAGAAAAAGGATTCGAGGAAAGTTCTACAGCTTCATTGGCCGGCTCTGAAGATGGCGTTTCTTTTATTGTTGGTCAGGCTAAAATGTCATATGCTTCTATGGATGTTAACGATGGTCTATTAAAGGATTCTGAAGACCTGACAACTGAAGCTACAGAAGGCATGATGCATGTTAATGAAGCAATGATGGATTCATCAAACATGGCACAACATGAAAGAAAAAAATATGATGACCGGGAAAATGTTGGGATTCAGGATGGCGACAGTGGAATTATACATTTAAATGTTAACAGTTCTGTTCCTTTGTTTAAGCCTCCCGATTGCAGATTGACTTCTCTTGTTGCTACAAAGCAAAACAATGAATCTAAATGTGTTAAACATGCGTTAGGTGATACTCTACAGTCTGATTTAGAGACTAGAAAGAGAGTGATTATCATTGGAGCTGGTCCTGCTGGGCTAACTGCTGCTCGCCACTTGAATCGTCAGGGATTTACCGTAACTGTGCTTGAGGCTAGGAATAGATTAGGAGGTCGGGTATTTACAGATCACTCATCTCTTTCTGTCCCTGTGGATCTTGGTGCTAGCATTATCACAGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCGTTGGTTTGCGCTCAGTTGGGCCTTGAATTGTCGGTGTTAAACAGCGACTGCCCTCTTTATGACATAGTGACTGGACAAAAAGTTCCTGCAGATATGGATGAAGCATTGGAAGCTGAATACAACAGTCTTCTTGATGACATGGTACTGGTTGTTGCTCGGAAAGGTGTACAAGCTATGAAAATGTCTCTTGAAGACGGTTTAGAATACGCCCTTAAGATTCGCCGCATGGGACACTCTAAAGGCAGTGAAGAAACTAAGCAAAGTAATTCTGCAGATCGTCCATTTGATTCCAAAAAGGATGGTGCTATGGAACAAAATTTTGATGAGATTTTGGATCCTCGGGAGAGGAGGGTTATGGATTGGCACTTTGCTCATTTAGAGTATGGCTGTGCTGCTTTGCTTAAAGAAGTTTCTCTTCCTTATTGGAATCAAGACGATGTGTATGGAGGATTTGGGGGACCTCATTGTATGATCAAAGGAGGTTATAGCAACATTGTTGAGTCTCTCGGGGAAGGGCTTGCTATTCACTTGAACCACGTTGTAACAAATGTGTCATATGGTATTAAGGAACCTAGCGAGAATAATAAAGTCAAAGTTTCTACATTGAATGGCAATGAATTTTTTGGAGATGCTGTCCTCATTACTGTCCCACTTGGTTGTTTGAAGGCCAAAACTATACAGTTCTCCCCCTCTTTGCCGGAGTGGAAATGTTCTTCCATTCAGCGTCTTGGCTTTGGAGTTCTCAATAAAGTGATTTTGGAATTTCCTACTGTGTTTTGGGATGATGCTGTGGACTACTTTGGAGCAACAGCTGAGGAGAGAAGTAAAAGAGGTCACTGCTTTATGTTCTGGAATGTCAAGAAAACAGTAGGGGCTCCTGTCCTTATAGCATTAGTGGTTGGTAAGGCAGCCATAGACGGTCAAAGTTTAAGCTCTTCTGATCATGTGAACCATGCATTGAAGGTTCTTCGAAAACTTTTTGGGGAGGCTTCAGTTCCTGATCCTCTTGCGTATGTTGTGACCGATTGGGGCAGGGATCCCTATAGCCTTGGTGCTTACTCTTATGTTGCTGTTGGAGCATCAGGAGAAGACTATGATATCTTAGGAAGACCAGTTGATAACTGCTTGTTTTTTGCTGGGGAAGCAACCTGCAAAGAGCACCCTGATACTGTTGGTGGTGCAATGATGAGTGGACTACGGGAGGCTGTTCGCATAATTGACATATTGAACACCGGAAATGATAATACTGCAGAGGTAGAGGCATTGGAAGCTGCACAGGGACAATTGGACACCGAAAGGAATGAAGTTAGGGACATAATAAAGAGACTTGATGCAGTTGAGCTTTCTAATATATTGTATAAGAACTCTTTTGACGGTGCTCCAATCTTAACCCGGGAAGCTTTATTAAGGGAAATGTTCCTCAATGTGAAAACCAATGCTGGGCGTTTGCATGTGGCCAAACAATTGCTAAGTCTTCCTGTTGGAAACTTGAAGTCCTTTGCTGGAAGTAAGGCGGGGCTAACTGTTCTCAACTCCTGGATACTGGACTCAATGGGCAAGGATGGTACCCAACTTTTGAGGCATTGTTTGCGTCTTCTTGTGCGTGTGTCAACTGATCTAGGTGCTGTACGCTTATCAGGAATGGGGAAAACAGTGAAGGAAAAAGTTTGTGTACATACTAGCCGTGATATTCGAGCTATAGCTAGTCAATTGGTCAATGTATGGCTTGAACTTTTCCGCAAAGAAAAAGCTTCAAATGGGGGATTGAAGTTGTCAAGACAAGCTACTACTACTGTCGATTTGTCAAAGAGGAAATATTTAAAGGATTCAGCCTCGGGAAAGCCTCCTCTAAGCATACATCAGGGTGCCGTTGAGAATAAAGGAGGCTCGGTGAATCCTCAATCTGCTGGAAGCAGTTCACCTTCCAACACACATGCGAAGAAATTGCACAGCAAACAAGGAAGACAACAATCAGCATGTGACTCGAGGCATGATGTCTGTTCTTCTAGGTCCCAAGGTTCAATAGACAAAATACCTACTAAGGAGGAAAATAAAAACTATGCTATGTCTGAAGAAGAAAAGGCTGCTATAGCTGCCGCAGAAGCTGCCCGTACTAAAGCAATTGCTGCTGCTGAGGCATATGCCTCTGCAGAAGCTAGGTGCAGTACACTGTTACAGCTTCCGAAGATACCCTCATTCCATAAATTTGCTAGACGAGAACAGTATTCACAAAATGACGAGTGTGATAGTAGAAAAAAATTGTCTGGTGGTTTTTTTGGAAGGCAAGATTGTGTTTCCGAGATTGATTCTAGGAATTGCAGAGTTAGGGACTGGTCTGTTGATTTTTCCACTGCTTGTGTTAATCTTGATAATTCTAAAATACCAGTTGACAACCTCTCACAGAGGAGTCATTCAAATGAGATAGCCAGCCATTTGAATTTCGGAGAGCGCTCAGGAGAAAGTGCTGCTGTGGACAGCAACCTATATACAAAAGCTTGGATCGATACAGCTGGTGATGGGGTAGTAAAAGACCATCTTGCCATTGAGAGATGGCAAGATCAAGCAGCTGAAGCTGATAGTTATTTTTCAAATCAAAGCATTCATTTGAAGGATGAGGAGGATTCAAATGCCTATTCAAGGCTACCCAGCTGGAAACATGATGGTGTAGCAAATGAAAGTTCTGTTTCCCAGGTTACTGTAAATAAGGAGGAGGCCAGCAAAGGTCATTCTCGAGGAGCAGATCATATTAAACAGGCTGTTGTTGACTATGTTGGATCACTACTTTTGCCACTTTATAAGGCTAGGAAGCTAGACAAGGATGGATACAAGGCAATAATGAAGAAAAGTGCAACAAAGGTCATGGAGCAAGCAACGGATGCAGAAAAAGCCATGACTGTTCGTGAGTTTCTAGATTTTAAGCGAAGGAATAAGATTCGCTCCTTTGTGGATATATTGATTGAGAGACATATGGCAACAAAAAAATCGGGTACAAAATCATAA 5664 0.4168 MEDLRSGTKKKKKRSKPIEIGFDSDNDEPIGSLFKFKKNKKGENSRVLDDNDTLASFRKRLKGPKRDHGSETVSALNVSVEGCDDDGLVEGGSGRSAEKDENGVDLLVSDDDMQVHHSSDQHMEESLSMIFNKSQSSSVKKSRAGLGSKKKRGNRNVDSGLEHGCKSLTENIDYAIESRSRSASALQYVERNHESGTFCSVSAMDDQNSGDDCFQEKKAKGICDSNNPDGSAVDHSKRIIDCVGDRQQLSSVQVEDVCGASDEKAALQERILDNSLNQCSAMLQDVEIIDTASPSKLGEGVCGFSETGELGNRLNDEIAEKQVRIGASEGGVSTSYHTELLIKSNENILNENNAMVCGIFFQESSINGGIKLEAEFVSGRNCYDYSASDTNAEVQDVVVGCSPEKHDAIASGSLSSIAPNGADESELIVQSNHPDKPLETCNVPKYSSVSILKCSSVLDPTQSDGSSIQSSVPDENGNIAEYHACVSDFADNGGKISGIPRAPRKTKMHKHGDMTYEGDADWEILINDKSLNESQDAVDGDRTLRTRGKQDSSLNAVEDSENVAVAAVSAGLKAAAVGPIEKIKFKEILKRKGGLKEYLDCRNQILSLWSSDVARILPLAECGVSDIRSENESPRTSLIREVYAFLDQYGYINVGVASQKENVESSARHCYKLVKEKGFEESSTASLAGSEDGVSFIVGQAKMSYASMDVNDGLLKDSEDLTTEATEGMMHVNEAMMDSSNMAQHERKKYDDRENVGIQDGDSGIIHLNVNSSVPLFKPPDCRLTSLVATKQNNESKCVKHALGDTLQSDLETRKRVIIIGAGPAGLTAARHLNRQGFTVTVLEARNRLGGRVFTDHSSLSVPVDLGASIITGVEADVATERRPDPSSLVCAQLGLELSVLNSDCPLYDIVTGQKVPADMDEALEAEYNSLLDDMVLVVARKGVQAMKMSLEDGLEYALKIRRMGHSKGSEETKQSNSADRPFDSKKDGAMEQNFDEILDPRERRVMDWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGPHCMIKGGYSNIVESLGEGLAIHLNHVVTNVSYGIKEPSENNKVKVSTLNGNEFFGDAVLITVPLGCLKAKTIQFSPSLPEWKCSSIQRLGFGVLNKVILEFPTVFWDDAVDYFGATAEERSKRGHCFMFWNVKKTVGAPVLIALVVGKAAIDGQSLSSSDHVNHALKVLRKLFGEASVPDPLAYVVTDWGRDPYSLGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDNTAEVEALEAAQGQLDTERNEVRDIIKRLDAVELSNILYKNSFDGAPILTREALLREMFLNVKTNAGRLHVAKQLLSLPVGNLKSFAGSKAGLTVLNSWILDSMGKDGTQLLRHCLRLLVRVSTDLGAVRLSGMGKTVKEKVCVHTSRDIRAIASQLVNVWLELFRKEKASNGGLKLSRQATTTVDLSKRKYLKDSASGKPPLSIHQGAVENKGGSVNPQSAGSSSPSNTHAKKLHSKQGRQQSACDSRHDVCSSRSQGSIDKIPTKEENKNYAMSEEEKAAIAAAEAARTKAIAAAEAYASAEARCSTLLQLPKIPSFHKFARREQYSQNDECDSRKKLSGGFFGRQDCVSEIDSRNCRVRDWSVDFSTACVNLDNSKIPVDNLSQRSHSNEIASHLNFGERSGESAAVDSNLYTKAWIDTAGDGVVKDHLAIERWQDQAAEADSYFSNQSIHLKDEEDSNAYSRLPSWKHDGVANESSVSQVTVNKEEASKGHSRGADHIKQAVVDYVGSLLLPLYKARKLDKDGYKAIMKKSATKVMEQATDAEKAMTVREFLDFKRRNKIRSFVDILIERHMATKKSGTKS 1887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00124 1887 MobiDBLite consensus disorder prediction 1494 1575 - -
Trre1g00124 1887 SUPERFAMILY Homeodomain-like 561 658 IPR009057 -
Trre1g00124 1887 Gene3D - 923 1249 - -
Trre1g00124 1887 Gene3D - 562 668 IPR036388 -
Trre1g00124 1887 MobiDBLite consensus disorder prediction 1513 1563 - -
Trre1g00124 1887 FunFam Lysine-specific histone demethylase 1A 562 666 - -
Trre1g00124 1887 ProSiteProfiles SWIRM domain profile. 563 663 IPR007526 GO:0005515
Trre1g00124 1887 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1394 1476 IPR035441 -
Trre1g00124 1887 MobiDBLite consensus disorder prediction 966 988 - -
Trre1g00124 1887 PRINTS Adrenodoxin reductase family signature 816 838 - -
Trre1g00124 1887 PRINTS Adrenodoxin reductase family signature 839 852 - -
Trre1g00124 1887 MobiDBLite consensus disorder prediction 1 31 - -
Trre1g00124 1887 Coils Coil 1310 1330 - -
Trre1g00124 1887 MobiDBLite consensus disorder prediction 133 162 - -
Trre1g00124 1887 Pfam Flavin containing amine oxidoreductase 825 1294 IPR002937 GO:0016491
Trre1g00124 1887 SUPERFAMILY FAD-linked reductases, C-terminal domain 1132 1243 - -
Trre1g00124 1887 Pfam SWIRM domain 573 653 IPR007526 GO:0005515
Trre1g00124 1887 SUPERFAMILY FAD/NAD(P)-binding domain 813 1297 IPR036188 -
Trre1g00124 1887 PANTHER FLAVIN MONOAMINE OXIDASE 815 1301 - -
Trre1g00124 1887 Gene3D - 817 1292 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00124 Trre-Chr1 904295 912530 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Trre1g00124 Amino_oxidase 2.2e-107 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00124 1 904295 912530 Trre1g00124 1 904295 912530 ECH